View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_5 (Length: 538)
Name: NF14165_low_5
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_5 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 25325737 - 25325207
Alignment:
| Q |
1 |
aaaatagcctaatcaatatttttcaaaactccgtctttctcgaattcattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25325737 |
aaaatagcctaatcaatatttttcaaaactccgtctttctcgaattcattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttgtct |
25325638 |
T |
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| Q |
101 |
aacaataaattgttatgtcgactattgttctagtcatcttattctcatgtatatgtattataacattgatccaatgttgccattaattaattaatatgtt |
200 |
Q |
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| T |
25325637 |
aacaataaattgttttgtcgactattgttctagccatcttattctcatgtat------tataacattgatccaatgttgccattagttaattaatatgtt |
25325544 |
T |
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| Q |
201 |
gaatattttgtgtccttatttaatgtaagtaccaaatctacacgtagccatataatatacgtgacgtgtttagtaagcttccaaagtgaaatcttgacat |
300 |
Q |
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| T |
25325543 |
gaatattttgtgtccttatttaatgtaagtaccaaatctacacgtagccatata-----cgtgacgtgtttagtaagcttccaaactggaatcttgacat |
25325449 |
T |
|
| Q |
301 |
gtatattcttaaataacctgaactgaataaaataatgtatgtcatataagtttgattaacgcaatgaaaacagaagaaattaatatggctttgatcttga |
400 |
Q |
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| T |
25325448 |
gtatattcttaaataacctgaactgaataaaataatgtatgtcatataagtttgattaacgcaatgaaaacagaagaaattaatatggctttgatcttga |
25325349 |
T |
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| Q |
401 |
aggtgtttgctttgaatg---------ttgcagtagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttctga |
491 |
Q |
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| T |
25325348 |
aggtgttagcattgaaagaattactaaatgttgcagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttctta |
25325249 |
T |
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| Q |
492 |
ctttgtgtttggtgcttcaacttcagcttaccaagtttgttc |
533 |
Q |
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| T |
25325248 |
ctttgtgtttggtgcttcaacttcagcttaccaagtttgttc |
25325207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 429 - 538
Target Start/End: Complemental strand, 25330640 - 25330531
Alignment:
| Q |
429 |
agtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttctgactttgtgtttggtgcttcaacttcagcttaccaagtt |
528 |
Q |
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||||||| |||||||||| || ||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25330640 |
agtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgaattcccttctgactttgtgtttggtgtatcaacttcagcttaccaagtt |
25330541 |
T |
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| Q |
529 |
tgttcatctc |
538 |
Q |
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||||| |||| |
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| T |
25330540 |
tgttcttctc |
25330531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 533
Target Start/End: Original strand, 9988451 - 9988544
Alignment:
| Q |
441 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttc |
533 |
Q |
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||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||| || |||||||||||||||||| ||||||| |
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| T |
9988451 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccaactttgtgtttgttgtatcaacttcagcttaccaattttgttc |
9988544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 25322980 - 25322875
Alignment:
| Q |
47 |
cattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttatctaacaataaattgttatgtcgactattgttctagtcatcttattctc |
146 |
Q |
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|||||| | |||||||||||||||||| |||| ||| ||||| |||| || |||| || | || | |||||| | |||| |||||| |||||||||||| |
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| T |
25322980 |
cattgtcggtccaaacatgcatagtgcgctaagtcaatttgattataattgtctagcattgaactattatgttgcctatagttctaaccatcttattctc |
25322881 |
T |
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| Q |
147 |
atgtat |
152 |
Q |
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|||||| |
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| T |
25322880 |
atgtat |
25322875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 21725318 - 21725416
Alignment:
| Q |
441 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcatctc |
538 |
Q |
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||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
21725318 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21725416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 21805043 - 21805141
Alignment:
| Q |
441 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcatctc |
538 |
Q |
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||||||||| | | |||||||| |||||| || |||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
21805043 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
21805141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 538
Target Start/End: Original strand, 14331448 - 14331513
Alignment:
| Q |
474 |
agatgaattccctt-ctgactttgtgtttggtgcttcaacttcagcttaccaagtttgttcatctc |
538 |
Q |
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|||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
14331448 |
agatgagttccctttccgactttgtgtttggtgtatcaacttcagcttaccaagtttgttcttctc |
14331513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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