View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_6 (Length: 460)
Name: NF14165_low_6
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 29 - 444
Target Start/End: Complemental strand, 38932929 - 38932510
Alignment:
| Q |
29 |
tcacattcgttgaacttgtnnnnnnnnttggcaccgctgcggcattaatgaaagcatgatgaggtgtaagaatgaagggtttgatatgcatgcatggtga |
128 |
Q |
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| T |
38932929 |
tcacattcgttgaacttgtaaaaaaaattggcaccgctgcggcattaatgaaagcatgatgaggtgtaagaatgaagggtttgatatgcatgcatggtga |
38932830 |
T |
|
| Q |
129 |
agaatgtccacattgcttcacttacgtgtccatcgtttaaccttctctacatttctataaataaa-tcactacataacaatctccacagtt---cagcta |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |
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| T |
38932829 |
agaatgtccacattgcttcacttacgtgtccatcgtttaaccttctctacatttctataaataaaataactacataacaatctccacagttgttcagcta |
38932730 |
T |
|
| Q |
225 |
tcatggcaaagacaaaatctcttctgatcacactttgtttgttactcttcttatgttcagcacgacagcttccaccacgtcatcaaattgagtcgtgcca |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38932729 |
gcatggcaaagacaaaatctcttctgatcacactttgtttgttactcttcttctgttcagcacgacagcttccaccacgtcatcaaagtgagtcgtgcca |
38932630 |
T |
|
| Q |
325 |
actagatagcatcgatgcattggaacctgacaaccgcattgagtcagaagcaggtctgactgaaacatgggatgctaatcaccctgagctacgttgtgtt |
424 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932629 |
actagatagcatcgatgcattggaacctgacaacagcattgagtcagaagcaggtctgactgaaacatgggatgctaatcaccctgagctacgttgtgtt |
38932530 |
T |
|
| Q |
425 |
ggtgtctctgttctcaaacg |
444 |
Q |
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|||||||||||||||||||| |
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| T |
38932529 |
ggtgtctctgttctcaaacg |
38932510 |
T |
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