View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_7 (Length: 434)
Name: NF14165_low_7
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32887233 - 32886967
Alignment:
| Q |
1 |
tgttgaatcaaacacgttcatcttagtcgatcgatggacggagatacttaacacatatcacttttctcattcaacgtagctaagaaaattaaattggctc |
100 |
Q |
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| T |
32887233 |
tgttgaatcaaacacgtttatcttagtcgatcgatggacggagatacttaacaaatatcacttttctcattcaacgtagctaagaaaattaaattggctc |
32887134 |
T |
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| Q |
101 |
ttcaaatgcgagagagtaaaatcatcattgatcttaaacaaatttggtttgtcgttgttatagttaattgcagctagattagaattcattttaaataggt |
200 |
Q |
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| T |
32887133 |
gtcaaatgcgagagtgtaaaatcatcattgatcttaaacaaatttggtttgtcgttgttatagttaattgcagctagattagaattcattttaaataggt |
32887034 |
T |
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| Q |
201 |
aaggcttgtgaattatgatgaaccaaatacacaaataaatgttagttccatatatccaccttatgtttgaa |
271 |
Q |
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| T |
32887033 |
aaggtttgtgaattataatgaaccaaatacacaaataaatgttagttcc----atccaccttatgtttgaa |
32886967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 32886966 - 32886883
Alignment:
| Q |
305 |
taaagagtaaatttttgtaagagcctcaatgtgtcgaactagatttcattctctgactaatattatgaggttcactttaggctc |
388 |
Q |
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| T |
32886966 |
taaagtgtaaatttttgtaagagcctcaatgtgtcgaactagatttcattctctgactaatattatgaggttcactttaggctc |
32886883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 32886581 - 32886547
Alignment:
| Q |
400 |
ttttgaaatggtagagtagcatgtatgtcttcatc |
434 |
Q |
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| T |
32886581 |
ttttgaaatggtagagtagcatgtatgtcttcatc |
32886547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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