View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_8 (Length: 415)
Name: NF14165_low_8
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 33642228 - 33642617
Alignment:
| Q |
15 |
aaaaagaaaacagtgatcaaaagaagaattctggtaattctcccaagagtttgtcagaacatgatgatctttgtattgaatcaagcaagtttaagaaaga |
114 |
Q |
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| T |
33642228 |
aaaaagaaaacagtgatcagaagaagaattctggtaattctcccaagagtttgtcagaacatgatgatctttgtattgaatcaagcaagtttaagaaaga |
33642327 |
T |
|
| Q |
115 |
ttcaggtggtttaaacggttctcagtcgtggttgtcgacaaccgaaggagattacaaagagatggttgctacagtttgcatgcagtgtcacatgttggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33642328 |
ttcaggtggtttaaacggttctcagtcgtggttgtcgacaaccgaaggagattacaaagagatggttgctacagtttgcatgcagtgtcacatgttggtt |
33642427 |
T |
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| Q |
215 |
atgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcgaaattcttgaagagcaggtgcagcttcttct |
314 |
Q |
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| T |
33642428 |
atgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcgaaattcttgaagagcaggtgcagcttcttct |
33642527 |
T |
|
| Q |
315 |
gctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttttatatatacatcatatggcgcaaatgtatcaatcatcctatg |
406 |
Q |
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| T |
33642528 |
gctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttt--tatatacatcatatggcgcaaatgtatcaatcatcctatg |
33642617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 26416538 - 26416674
Alignment:
| Q |
164 |
gattacaaagagatggttgctacagtttgcatgcagtgtcacatgttggttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgca-- |
261 |
Q |
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||||||||||| ||| |||| |||||||| ||| |||||||||||||||| ||| | ||||| || |||||| | |||||||| |||||||||||||| |
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| T |
26416538 |
gattacaaagaaatgattgcaacagtttgtatgaagtgtcacatgttggtaatgctttgcaaatcatctccttcttgtcctaattgcaaattcatgcatc |
26416637 |
T |
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| Q |
262 |
-ctcaccagatcagaacccttcgaaattcttgaagag |
297 |
Q |
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| T |
26416638 |
caccaccagatcagaacccttccaaatttttgaagag |
26416674 |
T |
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