View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14165_low_9 (Length: 406)
Name: NF14165_low_9
Description: NF14165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14165_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3754123 - 3754335
Alignment:
| Q |
1 |
aaaaaacgtggtttatataatttgattcaccattatgttatgtttgtgggatatgagaaatataataatctttaagggtgaaatagaagatttccttaaa |
100 |
Q |
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| T |
3754123 |
aaaaaacgtggtttatataatttgattcaccattatgttatgtttgtgggatatgagaaatataataatctttaagggtgaaatagaagatttccttaaa |
3754222 |
T |
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| Q |
101 |
gttatgatggcacattaaaattctttgatgagtgtggttcggttcataaacagattagagagagattgtggttcacatgtatgtttctcacaatagattt |
200 |
Q |
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| T |
3754223 |
gttatgatgacacattaaaattctttgatgagtgtgattcggttcataaacagattagagagagattgtggttcacatgtatgtttctcacaatagattt |
3754322 |
T |
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| Q |
201 |
aaaagtgtgattt |
213 |
Q |
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||||||||||||| |
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| T |
3754323 |
aaaagtgtgattt |
3754335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 389
Target Start/End: Original strand, 3754348 - 3754526
Alignment:
| Q |
201 |
aaaagtgtgatttctttattaatagttcaaagtatcccttgtagtctcataaataaaacttgtttgactatnnnnnnnnnnnnnntaatctatctttaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
3754348 |
aaaagtgtgatttctttattaatagttcaaagtatcccttgtagtctcataaataaaacttgtttgactataaaaaaaaaa-----aaactatctttaaa |
3754442 |
T |
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| Q |
301 |
ttataagttgttagctattatacaaaaccaaaccaaaccaaacctaaatagcaaatacaaacttaattgaagtgctagtcagtaatgtt |
389 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
3754443 |
ttataagttgttagctattatacaaaac-----caaaccaaacctaaatagcaaatacaaacttaattgaagtgctacttagtaatgtt |
3754526 |
T |
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