View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14166_high_2 (Length: 295)
Name: NF14166_high_2
Description: NF14166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14166_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 7802398 - 7802672
Alignment:
| Q |
9 |
catataaacacacaaacttttcagnnnnnnnngcacaccaacacaacatttgaataaagggcacaaataaattgacnnnnnnnttgattatagtacctga |
108 |
Q |
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| T |
7802398 |
catataaaaacacaaacttttcagaaaacaaagcacaccaacacaacatttgaataaagggcacaaataaattaacaaaaaaattgattatagtacctga |
7802497 |
T |
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| Q |
109 |
caaaacaaaattactttagcccagaaaggtactaagctctgaaaaaattgattatggtgagaaagcttcactcttttcatg-nnnnnnnnnnatgacacg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
7802498 |
caaaacaaaattactttagcccagaaaggtactaagctcagaaaaaatttattatggtgagaaagcttcactcttttcatgtttttttttttatgacacg |
7802597 |
T |
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| Q |
208 |
tgacatgcacgtgttcccaatttggattattttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
282 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7802598 |
tgacatgcacgtgttaccaattttgattattttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
7802672 |
T |
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