View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14166_low_1 (Length: 365)
Name: NF14166_low_1
Description: NF14166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14166_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 21018968 - 21019326
Alignment:
| Q |
1 |
taatctttgggctcattttctgtgttggtcaaacacggcgtcaactaagaagcttagacatggcttccggttgatttggagtgcgatggtttgggctatt |
100 |
Q |
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| T |
21018968 |
taatctttgggctcattttctgtgttggtcaaacgcggcgtcaactaagaagcttagacatggcttccggttgatttggaatgcgacggtttgggctatt |
21019067 |
T |
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| Q |
101 |
ttggaagagaaggaatgatattgtgttcaataatggtgttgtcgacttagatgatttggtggaaaatattaaagttctatcgtgatattggagtttgagt |
200 |
Q |
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| T |
21019068 |
ttggaagagaaggaatgatattgtgttcaat-atggtgttgtcgacttagatgatttggtggaaaatattaaagttctatcatggtattggagtttgagt |
21019166 |
T |
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| Q |
201 |
aagttaaaaatcacgtcatgtcatgtctttactatgagtggtgttcgaatcctcgggaatgtttgattaggtaacagtcggttttggtggagtttagtgg |
300 |
Q |
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| T |
21019167 |
aagttaaaaatcac-----gtcatgtctttactatgagtggtgttggaatcctcgggaatgtttgattaggtaacagtcggttttggtggagttttgtgg |
21019261 |
T |
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| Q |
301 |
cannnnnnncttttggcaggcagcagcacctgttgtgtgggctggcacggctgctgtgctgctgt |
365 |
Q |
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| T |
21019262 |
cagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacggctgctgtgctgctgt |
21019326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 34468733 - 34468695
Alignment:
| Q |
230 |
tactatgagtggtgttcgaatcctcgggaatgtttgatt |
268 |
Q |
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| T |
34468733 |
tactatgagtggtgttggaaccctcgggaatgtttgatt |
34468695 |
T |
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