View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14166_low_2 (Length: 301)

Name: NF14166_low_2
Description: NF14166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14166_low_2
NF14166_low_2
[»] chr5 (30 HSPs)
chr5 (132-301)||(2618109-2618274)
chr5 (38-129)||(8323879-8323970)
chr5 (4-131)||(26534635-26534762)
chr5 (4-131)||(791592-791719)
chr5 (4-131)||(130385-130512)
chr5 (39-131)||(33377820-33377912)
chr5 (38-128)||(42630878-42630968)
chr5 (39-131)||(5146675-5146767)
chr5 (39-132)||(13823320-13823413)
chr5 (54-131)||(26534506-26534583)
chr5 (40-131)||(6518203-6518294)
chr5 (40-131)||(8489123-8489214)
chr5 (40-131)||(19898927-19899018)
chr5 (54-131)||(130254-130331)
chr5 (54-131)||(8323707-8323784)
chr5 (39-132)||(228716-228809)
chr5 (40-128)||(35454623-35454710)
chr5 (54-131)||(42630711-42630788)
chr5 (40-131)||(40881792-40881881)
chr5 (62-131)||(14388515-14388583)
chr5 (62-131)||(35454451-35454519)
chr5 (63-131)||(14069861-14069928)
chr5 (63-133)||(5146502-5146571)
chr5 (62-128)||(19897228-19897293)
chr5 (40-114)||(40881992-40882066)
chr5 (74-131)||(791810-791867)
chr5 (47-131)||(13823150-13823233)
chr5 (68-131)||(6518404-6518466)
chr5 (43-116)||(27319643-27319716)
chr5 (70-128)||(228987-229044)
[»] chr6 (8 HSPs)
chr6 (38-130)||(33022339-33022431)
chr6 (39-132)||(21389020-21389113)
chr6 (54-131)||(33022164-33022241)
chr6 (39-130)||(7789842-7789933)
chr6 (62-128)||(21389217-21389282)
chr6 (49-120)||(7789678-7789748)
chr6 (41-130)||(28472535-28472624)
chr6 (41-130)||(29859723-29859813)
[»] chr4 (13 HSPs)
chr4 (4-133)||(40534100-40534229)
chr4 (4-131)||(3102677-3102804)
chr4 (54-131)||(3102540-3102617)
chr4 (54-130)||(13690216-13690292)
chr4 (40-131)||(18936850-18936941)
chr4 (40-131)||(37177799-37177890)
chr4 (54-131)||(9231580-9231657)
chr4 (54-131)||(40533963-40534040)
chr4 (4-112)||(9231717-9231825)
chr4 (62-131)||(11147014-11147083)
chr4 (46-131)||(18381488-18381573)
chr4 (65-131)||(5121005-5121071)
chr4 (51-131)||(18936676-18936755)
[»] chr1 (25 HSPs)
chr1 (4-131)||(10227712-10227839)
chr1 (4-131)||(26552129-26552256)
chr1 (40-131)||(23346419-23346510)
chr1 (40-131)||(48871410-48871501)
chr1 (54-127)||(19059378-19059451)
chr1 (39-131)||(50892963-50893055)
chr1 (40-131)||(28217692-28217783)
chr1 (38-122)||(19059549-19059633)
chr1 (39-130)||(39669230-39669321)
chr1 (65-131)||(10227910-10227976)
chr1 (39-131)||(41833874-41833966)
chr1 (54-129)||(26551992-26552067)
chr1 (62-132)||(48752589-48752658)
chr1 (44-130)||(50904992-50905080)
chr1 (40-104)||(7062034-7062098)
chr1 (65-132)||(48871246-48871312)
chr1 (65-132)||(50893161-50893227)
chr1 (62-131)||(28217530-28217598)
chr1 (62-131)||(42180571-42180639)
chr1 (62-131)||(4156892-4156960)
chr1 (62-131)||(7062192-7062260)
chr1 (62-131)||(41834071-41834139)
chr1 (62-130)||(50905107-50905175)
chr1 (39-132)||(42180744-42180835)
chr1 (66-122)||(23346620-23346675)
[»] chr3 (13 HSPs)
chr3 (38-131)||(27073079-27073172)
chr3 (38-131)||(33214443-33214536)
chr3 (38-131)||(36274120-36274212)
chr3 (39-131)||(36635410-36635502)
chr3 (40-131)||(19580483-19580574)
chr3 (54-131)||(33214626-33214703)
chr3 (54-129)||(10598810-10598885)
chr3 (54-131)||(33219072-33219149)
chr3 (54-131)||(36274312-36274389)
chr3 (69-131)||(10599000-10599062)
chr3 (70-131)||(27072913-27072974)
chr3 (40-131)||(11651000-11651091)
chr3 (63-128)||(36635241-36635305)
[»] chr8 (14 HSPs)
chr8 (4-132)||(37994845-37994973)
chr8 (40-131)||(41539770-41539861)
chr8 (39-131)||(2814416-2814508)
chr8 (39-131)||(397177-397269)
chr8 (54-131)||(37994708-37994785)
chr8 (54-131)||(44036814-44036891)
chr8 (51-131)||(14193509-14193588)
chr8 (59-131)||(41539963-41540034)
chr8 (54-131)||(2814243-2814319)
chr8 (40-131)||(14193324-14193414)
chr8 (38-115)||(25101746-25101823)
chr8 (54-131)||(397007-397083)
chr8 (38-75)||(44036985-44037022)
chr8 (68-131)||(40587991-40588054)
[»] chr2 (22 HSPs)
chr2 (4-131)||(31860222-31860349)
chr2 (4-131)||(42028578-42028705)
chr2 (38-131)||(13280006-13280099)
chr2 (38-131)||(2059655-2059748)
chr2 (38-131)||(16115046-16115139)
chr2 (38-131)||(7317806-7317899)
chr2 (58-131)||(36059278-36059351)
chr2 (54-131)||(42028765-42028842)
chr2 (39-131)||(31470587-31470678)
chr2 (49-131)||(15332844-15332926)
chr2 (62-131)||(31860079-31860148)
chr2 (40-132)||(38086140-38086232)
chr2 (54-131)||(7317635-7317712)
chr2 (59-132)||(38085966-38086038)
chr2 (54-133)||(2059488-2059567)
chr2 (65-130)||(3671822-3671886)
chr2 (70-131)||(13279840-13279901)
chr2 (54-131)||(16115231-16115308)
chr2 (40-132)||(3671996-3672088)
chr2 (74-133)||(15330447-15330505)
chr2 (65-132)||(31470776-31470842)
chr2 (102-131)||(36059248-36059277)
[»] chr7 (10 HSPs)
chr7 (39-131)||(7298635-7298727)
chr7 (39-131)||(40521188-40521280)
chr7 (38-131)||(19805585-19805678)
chr7 (54-131)||(19804797-19804874)
chr7 (62-131)||(40521016-40521084)
chr7 (63-131)||(7298833-7298900)
chr7 (62-132)||(28949001-28949070)
chr7 (62-128)||(46567960-46568025)
chr7 (62-131)||(16979613-16979681)
chr7 (39-105)||(46568130-46568196)
[»] scaffold0214 (2 HSPs)
scaffold0214 (38-127)||(11630-11719)
scaffold0214 (54-131)||(11814-11891)
[»] scaffold0135 (2 HSPs)
scaffold0135 (54-131)||(37446-37523)
scaffold0135 (4-112)||(37583-37691)
[»] scaffold0140 (2 HSPs)
scaffold0140 (63-131)||(15847-15915)
scaffold0140 (100-129)||(16045-16074)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 2618109 - 2618274
Alignment:
Q  132 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaaataataattatcataaaaatattggtattgagacac 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  2618109 cacactcaaaatcaaaagcttagtttaaagcctctctcatttaagtttgagtccccccacaaaa----taattatcataaaaatattggtattgagacac 2618204  T
Q  232 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2618205 tttcagtacatgagtgggtgcaagtgcaacctgtcacctctgcatgctcttgactttaccctctcttctc 2618274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 8323879 - 8323970
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323879 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 26534635 - 26534762
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26534635 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggt 26534734  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||    
T  26534735 taggttcgttcctacacaagaatttctc 26534762  T

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Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 791719 - 791592
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  791719 gagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggt 791620  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||| ||||||||    
T  791619 taggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 130385 - 130512
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  130385 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggt 130484  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    |||||||||| ||||| |||||||||||    
T  130485 taggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 33377820 - 33377912
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  33377820 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 42630878 - 42630968
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  42630878 ataattattttaaaagaaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 5146675 - 5146767
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  5146675 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 13823320 - 13823413
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||    
T  13823320 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctcc 13823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 26534583 - 26534506
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 6518294 - 6518203
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||| ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6518294 aattattttaaaataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 8489214 - 8489123
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8489214 aattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 19898927 - 19899018
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  19898927 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 130331 - 130254
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 8323784 - 8323707
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 228809 - 228716
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||| |||||||  ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||  |||||||||    
T  228809 taattattttaaaataaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctcc 228716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 35454623 - 35454710
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35454623 aattatttttaactaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 42630788 - 42630711
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 40881881 - 40881792
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||   ||||||||||||||||||||||| ||||||||    
T  40881881 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaat--aatgttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 14388515 - 14388583
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388515 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 35454519 - 35454451
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454519 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 14069928 - 14069861
Alignment:
Q  63 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 5146571 - 5146502
Alignment:
Q  63 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 133  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5146571 acgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctcca 5146502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 19897293 - 19897228
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897293 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 40881992 - 40882066
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttc 114  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  40881992 aattattttaaaataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  74 tttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 13823233 - 13823150
Alignment:
Q  47 ttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||| ||  ||||||||||||||| ||| |||||| || | |||||| ||||||||||||||||||||||||||||||    
T  13823233 ttaaaagaaaaaaaatacgtgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  68 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 27319643 - 27319716
Alignment:
Q  43 tattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcct 116  Q
    |||||||||| ||||||| || || |||| ||||||||||||||||||||| |||||||||||| || ||||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  70 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 33022339 - 33022431
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33022339 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 21389113 - 21389020
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21389113 taattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctcc 21389020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 33022241 - 33022164
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 7789842 - 7789933
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7789842 taattattttttaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 21389217 - 21389282
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21389217 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  49 aaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacac 120  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  41 attattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||||||||||| ||  |||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 29859723 - 29859813
Alignment:
Q  41 attattttaaaagaaaacaacga-cgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||||||||||| ||  | ||||| ||| ||||||||||||||| |||  ||||||| ||||||||||||||||| || |||||||    
T  29859723 attattttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 40534100 - 40534229
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40534100 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggt 40534199  T
Q  104 taggttcgttcctacacaagaatttctcca 133  Q
    ||||||||||||||||||||||||||||||    
T  40534200 taggttcgttcctacacaagaatttctcca 40534229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 3102677 - 3102804
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3102677 gagagagagaaaggactagttgatttaattttttataattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggt 3102776  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||    
T  3102777 taggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 3102617 - 3102540
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 18936850 - 18936941
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  18936850 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 37177799 - 37177890
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  37177799 aattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 9231657 - 9231580
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 40534040 - 40533963
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 9231717 - 9231825
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  9231717 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggt 9231816  T
Q  104 taggttcgt 112  Q
    |||||||||    
T  9231817 taggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 11147083 - 11147014
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 18381488 - 18381573
Alignment:
Q  46 tttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| ||||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 5121005 - 5121071
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 18936755 - 18936676
Alignment:
Q  51 aagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| || ||||| |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||    
T  18936755 aagaaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 10227839 - 10227712
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  10227839 gagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggt 10227740  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||    
T  10227739 taggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 26552129 - 26552256
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  26552129 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggt 26552228  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    |||||||| |||||||||||||||||||    
T  26552229 taggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 23346510 - 23346419
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23346510 aattattttaaaataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 48871410 - 48871501
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48871410 aattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 50893055 - 50892963
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  50893055 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 28217692 - 28217783
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28217692 aattattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 19059549 - 19059633
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 122  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  19059549 ataattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 39669230 - 39669321
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    |||||||||||||| |||||||  |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  39669230 taattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 10227910 - 10227976
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 41833966 - 41833874
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||| |||||| ||||||| |||| |||||| ||| |||||||||||||    
T  41833966 taattattttaaaataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 129  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 48752589 - 48752658
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  48752589 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcc 48752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 50905080 - 50904992
Alignment:
Q  44 attttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatg--atatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||  |||  |||| ||||||||||||||||||||||||||||    
T  50905080 attttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 7062098 - 7062034
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtt 104  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7062098 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgtt 7062034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 48871312 - 48871246
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  48871312 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctcc 48871246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 50893161 - 50893227
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  50893161 gtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctcc 50893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 28217598 - 28217530
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||    
T  28217598 gacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 42180639 - 42180571
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  42180639 gacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 4156960 - 4156892
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156960 gacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 7062192 - 7062260
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  7062192 gacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 41834071 - 41834139
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834071 gacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 50905107 - 50905175
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| ||||||  ||||||| |||||||    
T  50905107 gacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 42180744 - 42180835
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||| |||| || || ||||||||||||| ||||||||||||||| ||||||| |||| |||||| | | ||||||||||||||    
T  42180744 taattattttaaaataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgatat-ttagattcgtttc-atacaagaatttctcc 42180835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  66 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 122  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 27073079 - 27073172
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27073079 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 33214536 - 33214443
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33214536 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 36274212 - 36274120
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36274212 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 36635410 - 36635502
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36635410 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 19580483 - 19580574
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19580483 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 33214626 - 33214703
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 129  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 33219149 - 33219072
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 36274312 - 36274389
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  69 catgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 27072974 - 27072913
Alignment:
Q  70 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 11651091 - 11651000
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| ||  | |||| |||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  11651091 aattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  63 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 37994845 - 37994973
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  37994845 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggt 37994944  T
Q  104 taggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||||||||||||||||||    
T  37994945 taggttcgttcctacacaagaatttctcc 37994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 41539861 - 41539770
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41539861 aattattttaaaataaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 2814416 - 2814508
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2814416 taattatttttaaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 397177 - 397269
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  397177 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 37994785 - 37994708
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 44036891 - 44036814
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 14193509 - 14193588
Alignment:
Q  51 aagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14193509 aagaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 41539963 - 41540034
Alignment:
Q  59 aacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41539963 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 2814319 - 2814243
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814319 aaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 14193414 - 14193324
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||  || |||||||||||||||||||| |||| ||||||||    
T  14193414 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 25101823 - 25101746
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcc 115  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||    
T  25101823 ataattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 397083 - 397007
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||| ||| |||||| |||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  397083 aaaaaaacaacgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 44036985 - 44037022
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttt 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44036985 ataattattttaaaagaaaacaacgacgtgtcatgttt 44037022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 40587991 - 40588054
Alignment:
Q  68 tcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||| ||| |||  ||||||| |||  ||||||||||||| ||||||||||    
T  40587991 tcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 31860222 - 31860349
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  |||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||    
T  31860222 gagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggt 31860321  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||    
T  31860322 taggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 42028705 - 42028578
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  42028705 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggt 42028606  T
Q  104 taggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||    
T  42028605 taggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 13280006 - 13280099
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13280006 ataattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 2059655 - 2059748
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  2059655 ataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 16115139 - 16115046
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  16115139 ataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 7317806 - 7317899
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7317806 ataattattttaaaagaaaaaaacaatgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 36059278 - 36059351
Alignment:
Q  58 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36059278 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 42028765 - 42028842
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 31470678 - 31470587
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470678 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 15332844 - 15332926
Alignment:
Q  49 aaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 31860148 - 31860079
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31860148 gacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 38086140 - 38086232
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||    
T  38086140 aattattttaaaataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctcc 38086232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 7317712 - 7317635
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 38086038 - 38085966
Alignment:
Q  59 aacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  38086038 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctcc 38085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 2059567 - 2059488
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 133  Q
    ||||||| || ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctcca 2059488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 3671886 - 3671822
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 130  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671886 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  70 atgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 16115231 - 16115308
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||| || ||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

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Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 3671996 - 3672088
Alignment:
Q  40 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    ||||||||||||| ||||||| ||||||| || |||||||||||| |||||||  ||||||| |||| ||||||||| || ||||||||||||    
T  3671996 aattattttaaaataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctcc 3672088  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 15330505 - 15330447
Alignment:
Q  74 tttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcca 133  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcca 15330447  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 31470776 - 31470842
Alignment:
Q  65 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  31470776 gtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 31470842  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 36059277 - 36059248
Alignment:
Q  102 gttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||    
T  36059277 gttaggttcgttcctacacaagaatttctc 36059248  T

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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 7298727 - 7298635
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7298727 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 40521188 - 40521280
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40521188 taattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 19805585 - 19805678
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19805585 ataattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 19804874 - 19804797
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 40521084 - 40521016
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521084 gacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 7298833 - 7298900
Alignment:
Q  63 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 28949001 - 28949070
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctcc 132  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  28949001 gacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 28949070  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 46568025 - 46567960
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaattt 128  Q
    |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568025 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 16979613 - 16979681
Alignment:
Q  62 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979613 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 46568130 - 46568196
Alignment:
Q  39 taattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgtta 105  Q
    |||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  46568130 taattatttttaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

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Target: scaffold0214 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 11719 - 11630
Alignment:
Q  38 ataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatt 127  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11719 ataattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

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Target: scaffold0214; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 11814 - 11891
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

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Target: scaffold0135 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 37523 - 37446
Alignment:
Q  54 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

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Target: scaffold0135; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 37583 - 37691
Alignment:
Q  4 gagagagatgaaggactagttaatttannnnnnnataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgt 103  Q
    ||||||||  ||||||||||| |||||       |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  37583 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggt 37682  T
Q  104 taggttcgt 112  Q
    |||||||||    
T  37683 taggttcgt 37691  T

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Target: scaffold0140 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 15915 - 15847
Alignment:
Q  63 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 131  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15915 acgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

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Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 16045 - 16074
Alignment:
Q  100 atgttaggttcgttcctacacaagaatttc 129  Q
    ||||||||||||||||||||||||||||||    
T  16045 atgttaggttcgttcctacacaagaatttc 16074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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