View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14166_low_3 (Length: 295)
Name: NF14166_low_3
Description: NF14166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14166_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 7802398 - 7802672
Alignment:
| Q |
9 |
catataaacacacaaacttttcagnnnnnnnngcacaccaacacaacatttgaataaagggcacaaataaattgacnnnnnnnttgattatagtacctga |
108 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
7802398 |
catataaaaacacaaacttttcagaaaacaaagcacaccaacacaacatttgaataaagggcacaaataaattaacaaaaaaattgattatagtacctga |
7802497 |
T |
|
| Q |
109 |
caaaacaaaattactttagcccagaaaggtactaagctctgaaaaaattgattatggtgagaaagcttcactcttttcatg-nnnnnnnnnnatgacacg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7802498 |
caaaacaaaattactttagcccagaaaggtactaagctcagaaaaaatttattatggtgagaaagcttcactcttttcatgtttttttttttatgacacg |
7802597 |
T |
|
| Q |
208 |
tgacatgcacgtgttcccaatttggattattttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
282 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802598 |
tgacatgcacgtgttaccaattttgattattttgaaaacgacgtcgttttaagttttcacagtttctagtattat |
7802672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University