View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14167_high_2 (Length: 412)

Name: NF14167_high_2
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14167_high_2
NF14167_high_2
[»] chr5 (12 HSPs)
chr5 (18-195)||(27965017-27965192)
chr5 (194-270)||(27964897-27964974)
chr5 (273-360)||(27964782-27964873)
chr5 (304-355)||(15470612-15470663)
chr5 (303-349)||(9628169-9628215)
chr5 (303-349)||(38435971-38436017)
chr5 (302-355)||(4395842-4395895)
chr5 (320-361)||(12256481-12256522)
chr5 (285-321)||(10106664-10106700)
chr5 (303-355)||(31250199-31250251)
chr5 (303-355)||(38503248-38503300)
chr5 (303-355)||(43227918-43227970)
[»] chr1 (15 HSPs)
chr1 (272-361)||(42946452-42946541)
chr1 (272-350)||(40209911-40209989)
chr1 (272-361)||(19424067-19424156)
chr1 (273-361)||(10790478-10790566)
chr1 (303-355)||(14262712-14262764)
chr1 (315-350)||(42851514-42851549)
chr1 (279-321)||(25034935-25034977)
chr1 (285-335)||(28916929-28916979)
chr1 (307-361)||(29332340-29332394)
chr1 (272-361)||(35195596-35195685)
chr1 (303-355)||(10123044-10123096)
chr1 (302-350)||(12148569-12148617)
chr1 (303-355)||(24134615-24134667)
chr1 (302-350)||(42937225-42937273)
chr1 (303-355)||(43109229-43109281)
[»] chr6 (12 HSPs)
chr6 (293-349)||(3338304-3338360)
chr6 (272-356)||(7164716-7164799)
chr6 (275-350)||(32470708-32470784)
chr6 (275-350)||(32502211-32502287)
chr6 (303-350)||(9357208-9357255)
chr6 (303-356)||(5641680-5641733)
chr6 (303-355)||(6228251-6228303)
chr6 (272-356)||(9455861-9455944)
chr6 (303-355)||(18903358-18903410)
chr6 (303-355)||(20415553-20415605)
chr6 (303-355)||(29321967-29322019)
chr6 (277-321)||(32142033-32142077)
[»] chr2 (13 HSPs)
chr2 (272-360)||(37886211-37886298)
chr2 (303-355)||(43027207-43027259)
chr2 (303-356)||(37592212-37592265)
chr2 (303-361)||(42541207-42541265)
chr2 (272-350)||(43684300-43684377)
chr2 (272-329)||(777305-777361)
chr2 (303-350)||(31149098-31149145)
chr2 (304-349)||(5207145-5207190)
chr2 (272-361)||(29090437-29090525)
chr2 (302-350)||(3330197-3330245)
chr2 (302-350)||(17376450-17376498)
chr2 (302-350)||(33613601-33613649)
chr2 (302-350)||(42678320-42678368)
[»] chr8 (7 HSPs)
chr8 (272-350)||(19957317-19957395)
chr8 (274-359)||(10201285-10201370)
chr8 (303-355)||(1032622-1032674)
chr8 (303-349)||(41845426-41845472)
chr8 (285-346)||(43874976-43875038)
chr8 (303-346)||(9525009-9525053)
chr8 (303-346)||(24608482-24608526)
[»] chr3 (13 HSPs)
chr3 (272-361)||(27394529-27394617)
chr3 (285-361)||(43897636-43897712)
chr3 (303-356)||(49429512-49429565)
chr3 (308-361)||(54457210-54457263)
chr3 (303-355)||(33528196-33528248)
chr3 (303-361)||(45431679-45431737)
chr3 (272-350)||(50676863-50676941)
chr3 (272-321)||(34898764-34898813)
chr3 (273-321)||(4860186-4860234)
chr3 (303-355)||(29645818-29645870)
chr3 (320-356)||(41768442-41768478)
chr3 (303-355)||(47864688-47864740)
chr3 (285-329)||(48516104-48516148)
[»] chr7 (10 HSPs)
chr7 (303-355)||(24030037-24030089)
chr7 (303-356)||(36977231-36977284)
chr7 (303-355)||(10091448-10091500)
chr7 (272-360)||(14707314-14707401)
chr7 (303-350)||(12166134-12166181)
chr7 (272-319)||(32856916-32856963)
chr7 (302-361)||(48258169-48258228)
chr7 (273-347)||(8133794-8133868)
chr7 (303-349)||(33248799-33248845)
chr7 (303-355)||(40273873-40273925)
[»] scaffold0054 (1 HSPs)
scaffold0054 (272-347)||(22480-22555)
[»] chr4 (10 HSPs)
chr4 (272-361)||(38690687-38690776)
chr4 (290-350)||(25234854-25234914)
chr4 (308-356)||(49607607-49607655)
chr4 (303-361)||(56555600-56555658)
chr4 (302-355)||(11491210-11491263)
chr4 (272-349)||(24570231-24570308)
chr4 (303-346)||(9285658-9285702)
chr4 (303-347)||(29430549-29430593)
chr4 (303-355)||(40406951-40407003)
chr4 (311-355)||(49607936-49607980)
[»] scaffold0050 (1 HSPs)
scaffold0050 (279-329)||(83604-83654)
[»] scaffold0001 (1 HSPs)
scaffold0001 (303-355)||(419764-419816)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 27965192 - 27965017
Alignment:
Q  18 cttagataagtgctaaatatgtctcctaaagatttcatggccatgtctcatcactttatccagagaagcataaacatagctaaattttttgtcatttctc 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  27965192 cttagataactgctaaatatgtctcctaaagatttcatggccatgtctcatcactttatcaagagaagcatgaacatagctaaatttt--gtcatttctc 27965095  T
Q  118 actttcctatggcaatgactggtgatgtcaaataagaggaggtaggaccttctgaactcttcatggtgcatcgtggat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27965094 actttcctatggcaatgactggtgatgtcaaataagaggaggtgggaccttctgaactcttcatggtgcatcgtggat 27965017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 27964974 - 27964897
Alignment:
Q  194 atttattacacataccgggtaccatttcaacg-aaaagtatatttaaatcatgtaaaaaatatgttttctgaggtcct 270  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||  ||||||||    
T  27964974 atttattacacataccgggtaccatttcaacgaaaaagtatatttaaaccctgtaataaatatgttttgcgaggtcct 27964897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 27964873 - 27964782
Alignment:
Q  273 ggataatgcatgttatatgtagggg----ctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttag 360  Q
    |||||||||||||||||||||||||    ||   |||||||||||  |||||| ||||||||||||| ||| ||||||| ||||||||||||    
T  27964873 ggataatgcatgttatatgtaggggttggctggggttcgaaccccgaacaccccatttattaaccttcaagctgaatttttcaagccgttag 27964782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 15470663 - 15470612
Alignment:
Q  304 ttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||| ||||    
T  15470663 ttcgaaccccagacaccccatttattcatctttaaggtgaatttctctagcc 15470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 9628169 - 9628215
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  9628169 gttcgaacctcagacaccctatttattcacctttaaggtgaaattct 9628215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 38435971 - 38436017
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  38435971 gttcgaaccacagacaccctacttattcacctttaaggtgaatttct 38436017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 4395895 - 4395842
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||||| ||||||| ||||||| | |||||||||||||||||| ||||    
T  4395895 agttcgaacccctgacaccccatttattcatctttaaggtgaatttctctagcc 4395842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 12256522 - 12256481
Alignment:
Q  320 cctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||| |||||||||||||||||||| ||||| ||||    
T  12256522 cctatttattcacctttaaggtgaatttctctagccgctagg 12256481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 10106664 - 10106700
Alignment:
Q  285 ttatatgtaggggctaaagttcgaaccccagacaccc 321  Q
    |||||||||||||| |||||||||||||| |||||||    
T  10106664 ttatatgtaggggccaaagttcgaaccccggacaccc 10106700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 31250199 - 31250251
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  31250199 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 31250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 38503300 - 38503248
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  38503300 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 38503248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 43227918 - 43227970
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  43227918 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 43227970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 42946541 - 42946452
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| |||||||   ||| ||||||| ||||||| | ||||| ||||| |||||||||||||| ||||||||||    
T  42946541 gggataatgcatattatatgcaggggctggggtttgaaccccggacaccccacttattcaccttaaaggtgaatttctctagccgttagg 42946452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 40209989 - 40209911
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||| ||||||| |||||||||||||   |||||||||||||| |||||  |||| || ||||||||||||||||||||    
T  40209989 gggacaatgcatattatatgtaggggtcgaagttcgaaccccaaacacctcattttttcacctttaaggtgaatttctc 40209911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 19424067 - 19424156
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| |||||     ||||||||||| ||||||| | ||||| |||||||||||||||||||| ||||| ||||    
T  19424067 gggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctagg 19424156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 10790566 - 10790478
Alignment:
Q  273 ggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||| || ||||||| ||||| |   ||| ||||||| ||||||||| ||||| |||||||||||||||||||  ||||||||||    
T  10790566 ggataatgtatattatatgcaggggttggggtttgaaccccggacaccctacttatttacctttaaggtgaatttctgtagccgttagg 10790478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 14262764 - 14262712
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||||| ||||| | |||||||||||||||||| ||||    
T  14262764 gttcgaaccccggacaccctacttattcatctttaaggtgaatttctctagcc 14262712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 350
Target Start/End: Original strand, 42851514 - 42851549
Alignment:
Q  315 gacaccctatttattaacctttaaggtgaatttctc 350  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42851514 gacaccctatttatttacctttaaggtgaatttctc 42851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 25034935 - 25034977
Alignment:
Q  279 tgcatgttatatgtaggggctaaagttcgaaccccagacaccc 321  Q
    ||||| |||||||||||||| | ||||||||||||||||||||    
T  25034935 tgcattttatatgtaggggccagagttcgaaccccagacaccc 25034977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 28916979 - 28916929
Alignment:
Q  285 ttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctt 335  Q
    ||||||||||||||| |||||||||||||| |||||| | ||||| |||||    
T  28916979 ttatatgtaggggctgaagttcgaaccccaaacaccccacttattcacctt 28916929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 29332340 - 29332394
Alignment:
Q  307 gaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    ||||||| ||||||| | ||||| |||||||||||||||||||| ||||| ||||    
T  29332340 gaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctagg 29332394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 35195685 - 35195596
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| |||| | |  |||||||||||  |||| | | ||||| ||||||||||| |||||||| ||||| ||||    
T  35195685 gggataatgcatattatatgcagggaccagggttcgaaccccgtacactccacttattcacctttaaggtaaatttctctagccgctagg 35195596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 10123096 - 10123044
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||||| |||||| | ||||| | |||||||||||||||||| ||||    
T  10123096 gttcgaaccccaaacaccccacttattcatctttaaggtgaatttctctagcc 10123044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 12148617 - 12148569
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    ||||| |||||||||||||| | ||||| | ||||||||||||||||||    
T  12148617 agttcaaaccccagacaccccacttattcatctttaaggtgaatttctc 12148569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 24134667 - 24134615
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  24134667 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 24134615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 42937273 - 42937225
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||  |||||||| |||||||| | ||||||||||||||||||    
T  42937273 agttcgaacttcagacaccttatttattcatctttaaggtgaatttctc 42937225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 43109281 - 43109229
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||  ||||||| | |||||||||||||||||| ||||    
T  43109281 gttcgaaccccggacacctcatttattcatctttaaggtgaatttctctagcc 43109229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 3338360 - 3338304
Alignment:
Q  293 aggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    ||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  3338360 aggggctgaagttcgaaccccagacaccctacttattcacatttaaggtgaatttct 3338304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 7164716 - 7164799
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    |||||||||||| ||||||||||||||   ||||||||||||   ||||| | ||||| |||||||||||||||||||| |||||    
T  7164716 gggataatgcat-ttatatgtaggggccggagttcgaaccccgaccaccccacttattcacctttaaggtgaatttctctagccg 7164799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 32470708 - 32470784
Alignment:
Q  275 ataatgcatgttatatgtaggggctaaagttcgaaccccagacaccc-tatttattaacctttaaggtgaatttctc 350  Q
    |||||||||  |||||| ||||||| | ||| ||||| ||||||||| || ||||| ||||||||||||||||||||    
T  32470708 ataatgcataatatatgcaggggctgaggtttgaacctcagacacccctacttattcacctttaaggtgaatttctc 32470784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 32502211 - 32502287
Alignment:
Q  275 ataatgcatgttatatgtaggggctaaagttcgaaccccagacaccct-atttattaacctttaaggtgaatttctc 350  Q
    |||||||||  |||||| ||||||  | ||| ||||| |||||||||| | ||||||||||||||||||||||||||    
T  32502211 ataatgcataatatatgcaggggccgaggtttgaacctcagacacccttacttattaacctttaaggtgaatttctc 32502287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 9357208 - 9357255
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||| |||||||||  ||||||| ||||||||||||||||||||    
T  9357208 gttcgaactccagacacctaatttattcacctttaaggtgaatttctc 9357255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 5641733 - 5641680
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    |||||||| || ||||||| | ||||| |||||||||||||||||||| |||||    
T  5641733 gttcgaactccggacaccccacttattcacctttaaggtgaatttctctagccg 5641680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 6228303 - 6228251
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  6228303 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 6228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 9455861 - 9455944
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    |||||||||||| || ||||||||||    ||||||||||||| |||||| | ||||| ||||||||| ||||||| || |||||    
T  9455861 gggataatgcat-ttgtatgtaggggtcggagttcgaaccccaaacaccccacttattcacctttaagttgaatttttctagccg 9455944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 18903410 - 18903358
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  18903410 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 18903358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 20415605 - 20415553
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  20415605 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 20415553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 29322019 - 29321967
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||||||||| || | ||||| | |||||||||||||||||| ||||    
T  29322019 gttcgaaccccagacatcccacttatttatctttaaggtgaatttctctagcc 29321967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 32142077 - 32142033
Alignment:
Q  277 aatgcatgttatatgtaggggctaaagttcgaaccccagacaccc 321  Q
    ||||||| |||||||||||||||   |||||||||||||||||||    
T  32142077 aatgcattttatatgtaggggctggggttcgaaccccagacaccc 32142033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 360
Target Start/End: Complemental strand, 37886298 - 37886211
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttag 360  Q
    |||||||||||| ||||||||||| ||||  ||||||||||  ||||||| | ||||| |||||||||||||||||||| | |||||||    
T  37886298 gggataatgcat-ttatatgtaggagctagggttcgaaccctggacaccccacttattcacctttaaggtgaatttctctaaccgttag 37886211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 43027207 - 43027259
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  43027207 gttcgaaccccagacaccccatttattcacctttaaggtgaatttctctagcc 43027259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 37592265 - 37592212
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  37592265 gttcgaaccccagacaccccacttatttacctttaaggtgaatttctctagccg 37592212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 42541207 - 42541265
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    ||||||||||||||||||| | ||| | |||||||||||||||||||| ||||| ||||    
T  42541207 gttcgaaccccagacaccccacttactcacctttaaggtgaatttctctagccgctagg 42541265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 43684300 - 43684377
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||||| || |||| ||||||| | |||||||||||  |||||| | ||||| ||||||||||||||||||||    
T  43684300 gggataatgcat-ttgtatgcaggggctgaggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctc 43684377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 777305 - 777361
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttatt 329  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||||| ||||||||    
T  777305 gggataatgcatgtt-tatgtaggggctatgattcgaaccccagacaccttatttatt 777361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 31149145 - 31149098
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    ||||||||||||||||||| | || |||| ||||||||||||||||||    
T  31149145 gttcgaaccccagacaccccactttttaatctttaaggtgaatttctc 31149098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 5207145 - 5207190
Alignment:
Q  304 ttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    |||||||||||||||||| | ||||| ||||||||| |||||||||    
T  5207145 ttcgaaccccagacaccccacttattcacctttaagatgaatttct 5207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 29090437 - 29090525
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||  ||||||   |||||||||||| ||||||  | ||||| | |||||||||||||||||| ||||| ||||    
T  29090437 gggataatgcat-ttatatacaggggccggagttcgaaccccggacacctcacttattcatctttaaggtgaatttctccagccgctagg 29090525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 3330245 - 3330197
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||||| ||||||| | ||||| | ||||||||||||||||||    
T  3330245 agttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 3330197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 17376498 - 17376450
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    ||||||||||||  |||||||||||||| |  |||||||||||||||||    
T  17376498 agttcgaaccccgaacaccctatttatttatttttaaggtgaatttctc 17376450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 33613649 - 33613601
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||||| ||||||| | ||||| ||||||||| ||||||||||    
T  33613649 agttcgaaccccggacaccccacttattcacctttaagttgaatttctc 33613601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 42678368 - 42678320
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||||| ||||||| | ||||| | ||||||||||||||||||    
T  42678368 agttcgaaccccggacaccccacttattcatctttaaggtgaatttctc 42678320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 19957395 - 19957317
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||||||| ||||||| |||||   | ||||||||||| ||||||| | ||||| ||||||||||||||||||||    
T  19957395 gggataatgcatattatatgcaggggacgaggttcgaaccccggacaccccacttattcacctttaaggtgaatttctc 19957317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 10201285 - 10201370
Alignment:
Q  274 gataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgtta 359  Q
    ||||||||||  ||||||||||||     ||||||||||| ||||||  ||||||| |||||||| ||||||||||| ||||||||    
T  10201285 gataatgcataatatatgtaggggtcggggttcgaaccccggacacctcatttattcacctttaaagtgaatttctctagccgtta 10201370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 1032622 - 1032674
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||||| ||||    
T  1032622 gttcgaaccccagacaccccacttattcatctttaaggtgaatttctctagcc 1032674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 41845472 - 41845426
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    |||||||||||  |||||||||||||| | |||||||||||||||||    
T  41845472 gttcgaaccccgaacaccctatttattcatctttaaggtgaatttct 41845426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 43875038 - 43874976
Alignment:
Q  285 ttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctt-taaggtgaatt 346  Q
    ||||||||||||||| | |||||||| |||||||||| | ||||| ||||| |||||||||||    
T  43875038 ttatatgtaggggctgaggttcgaacaccagacaccccacttattcaccttataaggtgaatt 43874976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 9525009 - 9525053
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctt-taaggtgaatt 346  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||    
T  9525009 gttcgaaccccagacaccctacttattcaccttataaggtgaatt 9525053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 24608526 - 24608482
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctt-taaggtgaatt 346  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||    
T  24608526 gttcgaaccccagacaccctacttattcaccttataaggtgaatt 24608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 27394529 - 27394617
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| |||||||   ||| ||||||| ||||||| | ||||| |||||||||||||||||||| ||||| ||||    
T  27394529 gggataatgcat-ttatatgcaggggctggggtttgaaccccggacaccccacttattcacctttaaggtgaatttctctagccgctagg 27394617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 43897636 - 43897712
Alignment:
Q  285 ttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    ||||||||||||  | | ||||||||| ||||||||| | ||||| |||||||||||||||||||| | ||||||||    
T  43897636 ttatatgtagggattgatgttcgaacctcagacaccccacttattcacctttaaggtgaatttctctaaccgttagg 43897712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 49429512 - 49429565
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    ||||||||||| ||||||| | ||||| |||||||||||||||||||| |||||    
T  49429512 gttcgaaccccggacaccccacttattcacctttaaggtgaatttctctagccg 49429565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 54457210 - 54457263
Alignment:
Q  308 aaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| ||||| ||||    
T  54457210 aaccccggacaccccatttattcacctttaaggtgaatttctctagccgctagg 54457263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 33528248 - 33528196
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||||| ||||    
T  33528248 gttcgaaccccagacaccccacttattcatctttaaggtgaatttctctagcc 33528196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 45431679 - 45431737
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    ||||||||||| ||||||| | ||||| |||||||||||||||||| | ||||| ||||    
T  45431679 gttcgaaccccggacaccccacttattcacctttaaggtgaatttccctagccgctagg 45431737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 50676941 - 50676863
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||| ||| ||| ||||||||||||| |   |||||||||||  |||||| | ||||| ||||||||||||||||||||    
T  50676941 gggacaatacatattatatgtaggggttggggttcgaaccccgaacaccccacttattcacctttaaggtgaatttctc 50676863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 34898813 - 34898764
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccc 321  Q
    |||||| ||||| ||||||| ||||||| | |||||||||||||||||||    
T  34898813 gggatattgcatattatatgcaggggctgaggttcgaaccccagacaccc 34898764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 4860186 - 4860234
Alignment:
Q  273 ggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccc 321  Q
    ||||| ||||| ||||||| ||||||| | |||||||||||||||||||    
T  4860186 ggatattgcattttatatgcaggggctgaggttcgaaccccagacaccc 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 29645870 - 29645818
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  29645870 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 29645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 41768442 - 41768478
Alignment:
Q  320 cctatttattaacctttaaggtgaatttctcaagccg 356  Q
    |||||||||| |||||||||||||||||||| |||||    
T  41768442 cctatttattcacctttaaggtgaatttctctagccg 41768478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 47864688 - 47864740
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  47864688 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 47864740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 48516148 - 48516104
Alignment:
Q  285 ttatatgtaggggctaaagttcgaaccccagacaccctatttatt 329  Q
    ||||||||||||||| || ||||||||||| |||||| |||||||    
T  48516148 ttatatgtaggggctgaaattcgaaccccatacaccccatttatt 48516104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 24030037 - 24030089
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||| ||||    
T  24030037 gttcgaaccccagacaccccatttattcatctttaaggtgaatttctctagcc 24030089  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 36977284 - 36977231
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    ||||||||| | ||||||||||||||| ||||||||||||| |||||| |||||    
T  36977284 gttcgaacctcggacaccctatttattcacctttaaggtgagtttctctagccg 36977231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 10091500 - 10091448
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||| |||||||| | ||||| |||||||||||||||||||| ||||    
T  10091500 gttcgaaccctagacacccaacttattcacctttaaggtgaatttctctagcc 10091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 14707314 - 14707401
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttag 360  Q
    |||||||||||| ||||||| ||||| |   ||||||||||| ||||||| | ||||| |||||||  ||||||||||| |||||||||    
T  14707314 gggataatgcat-ttatatgcaggggttggggttcgaaccccggacaccccacttattcacctttatagtgaatttctctagccgttag 14707401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 12166134 - 12166181
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    ||||||||||||||||||| | ||||| | ||||||||||||||||||    
T  12166134 gttcgaaccccagacaccccacttattcatctttaaggtgaatttctc 12166181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 32856963 - 32856916
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacac 319  Q
    |||||| ||||| ||||||| ||||||| |||||||||||||||||||    
T  32856963 gggatattgcatattatatgcaggggctgaagttcgaaccccagacac 32856916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 48258228 - 48258169
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| ||||||| |||||||| |||||||| || ||||| ||||    
T  48258228 agttcgaaccccggacaccccatttattcacctttaaagtgaatttgtctagccgctagg 48258169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 8133868 - 8133794
Alignment:
Q  273 ggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaattt 347  Q
    |||||||||||  | |||| ||||||  |||||||||| |||||||||| ||| |||  ||||||||||||||||    
T  8133868 ggataatgcataatttatgcaggggccgaagttcgaactccagacaccccattaatttgcctttaaggtgaattt 8133794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 33248845 - 33248799
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    ||||||||||| ||||||||| ||||| | |||||||||||||||||    
T  33248845 gttcgaaccccggacaccctacttattcatctttaaggtgaatttct 33248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 40273873 - 40273925
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  40273873 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 40273925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 22480 - 22555
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaattt 347  Q
    |||||||| ||| ||||||||||||||| | |||||||||||||||| || | ||||| |  ||||||||||||||    
T  22480 gggataatacatattatatgtaggggctgaggttcgaaccccagacatcccacttattcatttttaaggtgaattt 22555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 38690687 - 38690776
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    |||||||||||| ||||||| |||||     ||||||||||| ||||||| | |||||  ||||||||||||||||||| ||||| ||||    
T  38690687 gggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattctcctttaaggtgaatttctctagccgctagg 38690776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 25234914 - 25234854
Alignment:
Q  290 tgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttctc 350  Q
    |||||||| | | ||||||||||||||||||| | ||||| | ||||||||||||||||||    
T  25234914 tgtaggggttgaggttcgaaccccagacaccccagttattcatctttaaggtgaatttctc 25234854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 49607607 - 49607655
Alignment:
Q  308 aaccccagacaccctatttattaacctttaaggtgaatttctcaagccg 356  Q
    |||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  49607607 aaccccagacaccccacttattcacctttaaggtgaatttctctagccg 49607655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 56555600 - 56555658
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagccgttagg 361  Q
    ||||||||| |  |||||| | ||||| |||||||||||||||||||| ||||||||||    
T  56555600 gttcgaacctcgaacaccccacttattcacctttaaggtgaatttctctagccgttagg 56555658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 11491263 - 11491210
Alignment:
Q  302 agttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    |||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  11491263 agttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 11491210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 24570231 - 24570308
Alignment:
Q  272 gggataatgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttattaacctttaaggtgaatttct 349  Q
    |||||||||||   |||||||||||| |   |||||||||||  |||||||| ||||| | |||||||||||||||||    
T  24570231 gggataatgcacaatatatgtaggggttggggttcgaaccccgaacaccctacttattcaactttaaggtgaatttct 24570308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 9285702 - 9285658
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctt-taaggtgaatt 346  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||    
T  9285702 gttcgaaccccagacaccccacttattaaccttataaggtgaatt 9285658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 29430549 - 29430593
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaattt 347  Q
    ||||||||||| ||||||||| ||||| | |||||||||||||||    
T  29430549 gttcgaaccccggacaccctacttattcatctttaaggtgaattt 29430593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 40407003 - 40406951
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  40407003 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 40406951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 49607936 - 49607980
Alignment:
Q  311 cccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||    
T  49607936 cccagacaccccacttatttacctttaaggtgaatttctctagcc 49607980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 83604 - 83654
Alignment:
Q  279 tgcatgttatatgtaggggctaaagttcgaaccccagacaccctatttatt 329  Q
    |||||| ||||||||||||||  ||||||||| ||| ||||||||||||||    
T  83604 tgcatgatatatgtaggggctggagttcgaactccaaacaccctatttatt 83654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 419764 - 419816
Alignment:
Q  303 gttcgaaccccagacaccctatttattaacctttaaggtgaatttctcaagcc 355  Q
    ||||||||||| ||||||| | ||||| | |||||||||||||||||| ||||    
T  419764 gttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 419816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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