View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_high_7 (Length: 290)
Name: NF14167_high_7
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 42463237 - 42463379
Alignment:
| Q |
19 |
gagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgttactcctaaggctgtttctgattcacagaattc |
118 |
Q |
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| T |
42463237 |
gagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgtcactcctaaggctgtttctgattcacagaattc |
42463336 |
T |
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| Q |
119 |
tcagacttgccttgatcctgacgctagcagagtgagtttatat |
161 |
Q |
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| T |
42463337 |
tcagacttgccttgatcctgacgctagcagagtgagtttatat |
42463379 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 42463412 - 42463495
Alignment:
| Q |
194 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
277 |
Q |
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| T |
42463412 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
42463495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 37076814 - 37076882
Alignment:
| Q |
88 |
ctcctaaggctgtttctgattcacagaattctcagacttgccttgatcctgacgctagcagagtgagtt |
156 |
Q |
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| T |
37076814 |
ctcctaaggctgtttctgattccaaaaactctcagacttgtcttgatccagatgctagcagagttagtt |
37076882 |
T |
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