View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_1 (Length: 536)
Name: NF14167_low_1
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 36470228 - 36470440
Alignment:
| Q |
78 |
tcttaatcttttcttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagttctta |
177 |
Q |
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| T |
36470228 |
tcttaatcttttattctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagtgctta |
36470327 |
T |
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| Q |
178 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaatagtactattttgtt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36470328 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaatagttctattttgtt |
36470427 |
T |
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| Q |
278 |
tcacttacgactc |
290 |
Q |
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||||||||||||| |
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| T |
36470428 |
tcacttacgactc |
36470440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 363 - 524
Target Start/End: Original strand, 36470444 - 36470605
Alignment:
| Q |
363 |
gcgcatgtgttggttaggcttcatattgagaaagtaaactatttcccactctaaatccaaaatcatatgtgagattatttgatgtaaatgattgatttgc |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36470444 |
gcgcatgtgttggttaggcttcatattgagaaagtaaactatttcccactctaaatccaaaaccatatgtgagattatttgatgtaaatgattgatttgc |
36470543 |
T |
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| Q |
463 |
aaatagaatttggataggatgctattgattcacaagtagaacacttcaaatgttgttcatct |
524 |
Q |
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| T |
36470544 |
aaatagaatttggataggatgctattgattcacaagtagaacacttcaaatgttgttcatct |
36470605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 36469949 - 36470006
Alignment:
| Q |
25 |
ctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
82 |
Q |
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| T |
36469949 |
ctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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