View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_10 (Length: 270)
Name: NF14167_low_10
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 24825919 - 24825676
Alignment:
| Q |
11 |
cagagacgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgcggcatagtaaaaaactaaaatgagttttgaaacaacca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24825919 |
cagacacgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgccgcatagtaaaaaactaaaatgagttttgaaacaacca |
24825820 |
T |
|
| Q |
111 |
gttaataatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcgagcttcataaactggtaccacaaaaactacattatattaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24825819 |
gttaataatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcgagcttcgtaaactggtaccacaaaaactacattatattaag |
24825720 |
T |
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| Q |
211 |
ttcaagagaatatcctttaaacatacacgaatacacgttaaagt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24825719 |
ttcaagagaatatcctttaaacatacacgaatacacgttaaagt |
24825676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 33649400 - 33649643
Alignment:
| Q |
11 |
cagagacgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgcggcatagtaaaaaactaaaatgagttttgaaacaacca |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
33649400 |
cagacacgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgccgcatagttaaaaactaaaatgagttttgaaacgacca |
33649499 |
T |
|
| Q |
111 |
gttaataatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcgagcttcataaactggtaccacaaaaactacattatattaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33649500 |
gttaataatagtttcgacgatataaaacattgtgttgtattgaacactaagacatttcgagcttcataaactggtaccacaaaaactacattatattaag |
33649599 |
T |
|
| Q |
211 |
ttcaagagaatatcctttaaacatacacgaatacacgttaaagt |
254 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33649600 |
ttcaagagaatatcctttaaacatacacgaatacacgttaaagt |
33649643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 24760100 - 24760338
Alignment:
| Q |
16 |
acgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgcggcatagtaaaaaactaaaatgagttttgaaacaaccagttaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24760100 |
acgtgatactacttataacattaggaatgacaatcatattttaagatgtggcaatgccgcatagtaaaaaactaaaatgagttttgaaacaaccagttaa |
24760199 |
T |
|
| Q |
116 |
taatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcgagcttcataaactggtaccacaaaaactacattatattaagttcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
24760200 |
taatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcaagcttcgtaaactcgtaccacaaaaactacattatattaagttcaa |
24760299 |
T |
|
| Q |
216 |
gagaatatcctttaaacatacacgaatacacgttaaagt |
254 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24760300 |
gagaatatcctttaaacatacacgaatacacgttaaagt |
24760338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 53026000 - 53026233
Alignment:
| Q |
16 |
acgtgatactacttataacattaggaatgacaatcatattttaagatgcggcaatgcggcatagtaaaaaactaaaatgagttttgaaacaaccagttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53026000 |
acgtgatactacttataacattaggaatgacaatcatattttaagatgtggcaatgccgcatagtaaaaaactaaaatgagttttgaaacaaccagttaa |
53026099 |
T |
|
| Q |
116 |
taatagtttcgacgatataaaacattgtgttgtattgaacactaaggcatttcgagcttcataaactggtaccacaaaaactacattatattaagttcaa |
215 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53026100 |
taatagtttcgatgatataaaacattatgttgtattgaacactaaggcatttcgagcttcataaactggtaccacaaaaactacattatattaagttcaa |
53026199 |
T |
|
| Q |
216 |
gagaatatcctttaaacatacacgaatacacgtt |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
53026200 |
gagaatatcctttaaacatacacgaatacacgtt |
53026233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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