View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_11 (Length: 270)
Name: NF14167_low_11
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 11018451 - 11018182
Alignment:
| Q |
1 |
taagttggtatatcaagagttgaagtgatttggtttgtgctatagttcatgaaatccaaaataacacctttaaggtttgaggtttttgaaatggattgaa |
100 |
Q |
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| T |
11018451 |
taagttggtatatcaagagttgaagtgatttggtttgtgctatagttcatgaaatccaaaataacacctttaaggtttgaggtttttgaaatggattgaa |
11018352 |
T |
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| Q |
101 |
gaacatggttaacatggtggttactacgaccacaaacttcaagtgggactatatgaggtgggagtgtaactgggaatgaaataggaggaatgtgatggaa |
200 |
Q |
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| T |
11018351 |
gaacatggttaacatggtggttactacgaccacaaacttcaagtgggactatatgaggtgggagtgtaactgggaatgaaataggaggaatgtgatggaa |
11018252 |
T |
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| Q |
201 |
agtaatagatggaaaagattcacaaccaaaggtgg------ttgtgagtttttggatctcttgtggtggt |
264 |
Q |
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| T |
11018251 |
agtaatagatggaaaagattcacaaccaaaggtggttgttgttgtgagtttttggatctcttgtggtggt |
11018182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 11079175 - 11079086
Alignment:
| Q |
40 |
ctatagttcatgaaatccaaaataacacctttaaggtttgaggtttttgaaatggattgaagaacatggttaacatggtggttactacga |
129 |
Q |
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| T |
11079175 |
ctatagttaaggaaatccaacataactgctttaaggtttgaggtttttgcaatggattgaagaatatgatgaacatggtggttgctacga |
11079086 |
T |
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