View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_2 (Length: 523)
Name: NF14167_low_2
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 234 - 507
Target Start/End: Original strand, 7654820 - 7655093
Alignment:
| Q |
234 |
cattctatttacgtttttaataaaagattgactcgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
333 |
Q |
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| T |
7654820 |
cattctatttacgtttttaataaaagattgacttgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
7654919 |
T |
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| Q |
334 |
tgttcgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgtctgtgttactgcttcataaatggaca |
433 |
Q |
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| T |
7654920 |
tgtttgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgtctgtgttactgcttcataaatggaca |
7655019 |
T |
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| Q |
434 |
tgtcatctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctcta |
507 |
Q |
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| T |
7655020 |
tgtcacctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctcta |
7655093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7654540 - 7654775
Alignment:
| Q |
1 |
ataatcaagaaacacataaataagaatctgatcttctcttttgatctgtttctataggttctgattcttgagataattaataataataatggcaatccat |
100 |
Q |
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| T |
7654540 |
ataatcaagaaacacataaataagaatctgatcttctctttttatctgtttctataagtttcgattcttgaactaattaataataataatggcaatccat |
7654639 |
T |
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| Q |
101 |
agaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttatttttgtttttgctggtc |
200 |
Q |
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| T |
7654640 |
agaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcatttgctgaatttttctccatgcttatttttgtttttgctggtc |
7654739 |
T |
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| Q |
201 |
aaggatctggcatggcttacagtgagagctctacat |
236 |
Q |
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| T |
7654740 |
aaggatctggcatggcttacagtgagagctctacat |
7654775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 52103645 - 52103506
Alignment:
| Q |
87 |
taatggcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttatttt |
186 |
Q |
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| T |
52103645 |
taatggcaatctacagaatagcaattgggtctcctagagaggctagcaatcctgctgcaattagagcagcctttgcagagttcttctctatgctcatttt |
52103546 |
T |
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| Q |
187 |
tgtttttgctggtcaaggatctggcatggcttacagtgag |
226 |
Q |
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| T |
52103545 |
tgtttttgctggccaaggctctggcatggcctatagtgag |
52103506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 40494259 - 40494319
Alignment:
| Q |
350 |
atgtgtttatattgaatcactttcatt--ctcaaattattaccggtgtctatgtcattgtc |
408 |
Q |
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| T |
40494259 |
atgtgattaaattcaatcactttcatttgcttaaattattaccggtgtctatgtcactgtc |
40494319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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