View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_5 (Length: 387)
Name: NF14167_low_5
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 49735521 - 49735165
Alignment:
| Q |
18 |
atagttagtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgcagtttttatgctggagcacaacttgttaagaatggcaaaa |
117 |
Q |
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| T |
49735521 |
atagttagtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgcagtttttatgctggagcacaacttgttaagaatggcaaaa |
49735422 |
T |
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| Q |
118 |
cctcaatatcagatgtttttcaagtaagttattgtccaaacttggatgctatgtcacatatagaggacaaagttcagaattgtccaaatttaagtttttt |
217 |
Q |
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| T |
49735421 |
cctcaatatcagatgtttttcaagtaagttattgtccaaacttggatgctatgtcacatatagaggacaaagttcagaattgtccaaatttaagtttttt |
49735322 |
T |
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| Q |
218 |
acttatgtcaattgttacttacaaagcataagctaattctaaaacagattaatatgtttttcaaaaaatatatatacaaagcaacaaggatttataagag |
317 |
Q |
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| T |
49735321 |
acttatgtcaattgttacttacaaagcataagctaattctaaaacagattaatatgtttttcaaaaaaaatatatacaaagcaacaaggatttataagag |
49735222 |
T |
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| Q |
318 |
ttgaattcatcacattgttctagcatcaagcatttaatttcctaattttcaggtgtt |
374 |
Q |
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| T |
49735221 |
ttgaattcatcacattgttctagcatcaagcatttaatttcctaattttcaggtgtt |
49735165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 51214589 - 51214718
Alignment:
| Q |
19 |
tagttagtggagttggttttggcttatcaatcttctttatgttctgtgtttatgcatgcagtttttatgctggagcacaacttgttaagaatggcaaaac |
118 |
Q |
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| T |
51214589 |
tagtcagtggaactggttttgggttagcaatcttctttctgttttgtgtctatgcaatcagtttttatgctggcgcccaacttattgagaatggcaaaac |
51214688 |
T |
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| Q |
119 |
ctcaatatcagatgtttttcaagtaagtta |
148 |
Q |
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| T |
51214689 |
ttcgatgtcaggagtttttcaagtaagtta |
51214718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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