View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_6 (Length: 363)
Name: NF14167_low_6
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 38 - 348
Target Start/End: Original strand, 24144815 - 24145142
Alignment:
| Q |
38 |
aaattgatggataacagttttaagttgatagtttgaaaatcagttttcagacgtaaacgacactaattcatttgggtggctctttagcatttctaaagtg |
137 |
Q |
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| T |
24144815 |
aaattgatgggtgacagttttaagttgatagtttgaaaatcacttttcagacgtaaacgacactaattcatttgggtggctcttttgcatttctaaagtg |
24144914 |
T |
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| Q |
138 |
ggtgtgtaatgtgttgttgggtttgttaatagtttttcacattaacattaactttgagtcctagtctcttaatcccaatcttatctaatcttt------- |
230 |
Q |
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| T |
24144915 |
ggtgtgtaatgtgttgttgggtttgttaatagtttttcacattaacattaactttgagtccaagtatcttaatctcaatcttatctaatctttgtcttaa |
24145014 |
T |
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| Q |
231 |
----------attttaatcttatcttaataatatacaagcaccaagcaataaataggcattgcacatcttaatcttatcttaatatacgagcactaagca |
320 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24145015 |
tcttatcttaatcataatcttatcttaataatatacaagcaccaagcaataaataggcattgcacatcttaatcttatcttaatatacgagcaccaagca |
24145114 |
T |
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| Q |
321 |
acaaatatgcatatttgcacatgtatca |
348 |
Q |
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||||||| | |||||||||||||||||| |
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| T |
24145115 |
acaaatagggatatttgcacatgtatca |
24145142 |
T |
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