View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14167_low_8 (Length: 308)
Name: NF14167_low_8
Description: NF14167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14167_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 46360269 - 46360509
Alignment:
| Q |
56 |
aactactttcctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgt |
155 |
Q |
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| T |
46360269 |
aactactttcctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgt |
46360368 |
T |
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| Q |
156 |
ttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaacattatattgca |
255 |
Q |
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| T |
46360369 |
ttggacaaaacattctagacacagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaac-----attgca |
46360463 |
T |
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| Q |
256 |
tggagtgagcattacactaccaagtttaaaccataaaaaccctatg |
301 |
Q |
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| T |
46360464 |
tggagtgagcattatactaccaagtttaaaccataaaaaccctatg |
46360509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 46360204 - 46360243
Alignment:
| Q |
17 |
atttttgatgtttttccttctaatagattgttatgttgaa |
56 |
Q |
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| T |
46360204 |
atttttgatgtttttccttctaatagattgttatgttgaa |
46360243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 44461499 - 44461680
Alignment:
| Q |
115 |
tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc |
214 |
Q |
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| T |
44461499 |
tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc |
44461598 |
T |
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| Q |
215 |
cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagtttaaaccataaaaaccctatg |
301 |
Q |
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| T |
44461599 |
cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagtttaaatcataaaaaccctatg |
44461680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 44469032 - 44469213
Alignment:
| Q |
115 |
tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc |
214 |
Q |
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| T |
44469032 |
tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc |
44469131 |
T |
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| Q |
215 |
cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagtttaaaccataaaaaccctatg |
301 |
Q |
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| T |
44469132 |
cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagtttaaatcataaaaaccctatg |
44469213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 44461395 - 44461434
Alignment:
| Q |
17 |
atttttgatgtttttccttctaatagattgttatgttgaa |
56 |
Q |
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| T |
44461395 |
attttttatgtttttccttctaatagattgttatgttgaa |
44461434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 44468928 - 44468967
Alignment:
| Q |
17 |
atttttgatgtttttccttctaatagattgttatgttgaa |
56 |
Q |
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| T |
44468928 |
attttttatgtttttccttctaatagattgttatgttgaa |
44468967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 44452238 - 44452285
Alignment:
| Q |
250 |
attgcatggagtgagcattacactaccaagtttaaaccataaaaaccc |
297 |
Q |
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| T |
44452238 |
attgcatggagtgcgcattacgctaccaagtttaaatgataaaaaccc |
44452285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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