View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14168_high_2 (Length: 340)
Name: NF14168_high_2
Description: NF14168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14168_high_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 32348669 - 32348348
Alignment:
| Q |
18 |
ctatcacgtgtcattctagctccatgacaaaaacattcttattcttatccattactacatgttgagaatgagacttgaacatgaaaatcagttcctacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32348669 |
ctatcacgtgtcattctagctccatgacaaaaacattcttattcttatccattactacatgttgagaatgagacttgaacatgaaaatcagttcctacaa |
32348570 |
T |
|
| Q |
118 |
caaaactgatgtgatagtatcatttgtattatgcgttggaagaaaattaataatataggagtttaatattgatgtcacctaagtgtnnnnnnnttataca |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
32348569 |
caaa-ctgatgtgatagtatcatttgtactatgcattggaagaaaattaataatataagagtttaatcttgatgtcatctaagtgtaaaaaaattataca |
32348471 |
T |
|
| Q |
218 |
tgtttgcaatgttggagaatatttcttaatgtctttgattcaaatcctttggatacttatttacgtggacaagttgatataaacttttgttctgatttta |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32348470 |
tgtttgctatgttggagaatatttcttaatgtctttgattcaaatcctttggatacttatttacgtggacaagttgatataaaattttgttctgatttta |
32348371 |
T |
|
| Q |
318 |
attgaaccctcgttagtggttga |
340 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32348370 |
attgaaccctcgttagtggttga |
32348348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University