View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14168_low_1 (Length: 501)
Name: NF14168_low_1
Description: NF14168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14168_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 3 - 493
Target Start/End: Original strand, 10844173 - 10844663
Alignment:
| Q |
3 |
attaaaaaccactcttctaataatccacactaatcacgtctttatgctcttaactggagtctgtttcttctggtttacactaattgctctagctttcacc |
102 |
Q |
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| T |
10844173 |
attaaaaaccactcttctaataatccacattaatcaagtctttatgctcttaactggagcctgtttcttctggtttacactaattgctctagctttcacc |
10844272 |
T |
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| Q |
103 |
ttattatttgatgacacatttttagtagattttgatgatattggccagtgtccactagtaacagccatatctttaaactgttctaggctttcaagtgttt |
202 |
Q |
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| T |
10844273 |
ttattatttgatgaaacatttttagtagattttgatgatattggccagtgtccactagtaacagccatatctttaaactgttctaggctttcaagtgttt |
10844372 |
T |
|
| Q |
203 |
caacaatcatcgccattcttggtctgtctttaggacgcagacttatacattgcaatgccaaatgtgcaatctcttttgcacctttgacagaatattgtcc |
302 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10844373 |
caacaatcatcgccattcttggtctgtctttaggatgcagacttatacattgcaatgccaaatgtgcaatctcttttgcacctttgacagaatattgtcc |
10844472 |
T |
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| Q |
303 |
cgcaagccttggatccataatgtacctcaatcttctactgctactcaagtaaggctttgtccaatccacgatgttttgttctgtctttggtcttgttttg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10844473 |
cgcaagccttggatccataatgtacctcaatcttctactgctactcaagtaaggctttgtccaatccacaatgttttgttctgtctttggtcttgttttg |
10844572 |
T |
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| Q |
403 |
tctgttgctcttcttcctgttagcagttctagcaggactacgccgaagctatagacatcactttttgtagtcaagtgacctgtaatgtaaa |
493 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10844573 |
tctgttgctcttcttcctgtgagcagttctagcaggactacgccgaagctatagacatcactttttgtagtcaagtgacctgtaatgtaaa |
10844663 |
T |
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