View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14169_low_2 (Length: 606)

Name: NF14169_low_2
Description: NF14169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14169_low_2
NF14169_low_2
[»] chr7 (15 HSPs)
chr7 (1-113)||(41279923-41280035)
chr7 (1-113)||(41286979-41287091)
chr7 (110-179)||(7460560-7460629)
chr7 (110-167)||(24185670-24185727)
chr7 (110-168)||(24188224-24188282)
chr7 (122-167)||(7460908-7460953)
chr7 (110-167)||(43511205-43511262)
chr7 (110-170)||(43510878-43510938)
chr7 (122-173)||(17813971-17814022)
chr7 (134-168)||(22566303-22566337)
chr7 (110-159)||(6376375-6376424)
chr7 (110-167)||(6376714-6376771)
chr7 (122-167)||(10017960-10018005)
chr7 (134-167)||(34535695-34535728)
chr7 (116-168)||(36469895-36469946)
[»] chr4 (24 HSPs)
chr4 (6-102)||(19524396-19524492)
chr4 (110-177)||(45505414-45505481)
chr4 (110-174)||(17524198-17524262)
chr4 (110-173)||(11306608-11306671)
chr4 (110-168)||(18415041-18415099)
chr4 (110-168)||(31141679-31141737)
chr4 (110-168)||(31143753-31143811)
chr4 (110-168)||(49983793-49983851)
chr4 (110-170)||(48846068-48846128)
chr4 (122-165)||(4592722-4592765)
chr4 (113-171)||(43913391-43913449)
chr4 (122-168)||(49984165-49984211)
chr4 (118-179)||(46397295-46397356)
chr4 (110-167)||(52485343-52485400)
chr4 (110-170)||(24671950-24672010)
chr4 (110-168)||(4416476-4416534)
chr4 (110-168)||(5665798-5665856)
chr4 (122-168)||(5688760-5688806)
chr4 (118-168)||(37724758-37724808)
chr4 (134-168)||(45170894-45170928)
chr4 (134-168)||(45505059-45505093)
chr4 (110-167)||(4416832-4416889)
chr4 (110-167)||(36752860-36752917)
chr4 (110-170)||(20268892-20268952)
[»] chr1 (25 HSPs)
chr1 (110-170)||(48171791-48171851)
chr1 (110-170)||(48171440-48171500)
chr1 (122-171)||(22792287-22792336)
chr1 (126-175)||(25622601-25622650)
chr1 (113-168)||(42604630-42604685)
chr1 (110-168)||(19987334-19987392)
chr1 (122-168)||(42604996-42605042)
chr1 (122-171)||(142808-142857)
chr1 (123-168)||(6043448-6043493)
chr1 (110-167)||(33460240-33460297)
chr1 (110-167)||(34517965-34518022)
chr1 (112-168)||(143170-143226)
chr1 (134-170)||(35795695-35795731)
chr1 (122-173)||(8718402-8718453)
chr1 (113-168)||(8718554-8718609)
chr1 (122-177)||(35795304-35795359)
chr1 (122-168)||(31872965-31873011)
chr1 (110-168)||(33459895-33459953)
chr1 (134-168)||(37245947-37245981)
chr1 (110-167)||(14419821-14419878)
chr1 (129-170)||(14420153-14420194)
chr1 (122-167)||(18519656-18519701)
chr1 (122-167)||(22792644-22792689)
chr1 (134-167)||(31872709-31872742)
chr1 (136-168)||(3075292-3075324)
[»] chr8 (17 HSPs)
chr8 (110-168)||(4623455-4623513)
chr8 (110-174)||(4623063-4623127)
chr8 (110-168)||(7535300-7535358)
chr8 (122-168)||(18935053-18935099)
chr8 (110-164)||(18935403-18935457)
chr8 (122-167)||(3016048-3016093)
chr8 (110-171)||(9710213-9710274)
chr8 (110-167)||(16049832-16049889)
chr8 (110-167)||(18548539-18548596)
chr8 (134-171)||(21445982-21446019)
chr8 (110-167)||(34687755-34687812)
chr8 (123-167)||(23871002-23871046)
chr8 (113-172)||(7645141-7645200)
chr8 (113-168)||(18429442-18429497)
chr8 (134-168)||(34439602-34439636)
chr8 (108-165)||(3111463-3111520)
chr8 (110-174)||(7644774-7644837)
[»] chr2 (22 HSPs)
chr2 (122-168)||(43971880-43971926)
chr2 (110-165)||(26845536-26845591)
chr2 (110-168)||(14473506-14473564)
chr2 (122-168)||(32622218-32622264)
chr2 (110-167)||(24015813-24015869)
chr2 (110-167)||(32622543-32622600)
chr2 (123-167)||(36122064-36122108)
chr2 (110-173)||(3217280-3217343)
chr2 (116-163)||(10307616-10307663)
chr2 (113-168)||(13140620-13140675)
chr2 (110-168)||(15988013-15988069)
chr2 (110-168)||(13140290-13140348)
chr2 (122-168)||(14424239-14424285)
chr2 (134-168)||(27956725-27956759)
chr2 (110-172)||(29526592-29526654)
chr2 (110-168)||(29526948-29527006)
chr2 (110-168)||(38573290-38573348)
chr2 (134-168)||(39060308-39060342)
chr2 (122-168)||(43513925-43513971)
chr2 (110-167)||(6795526-6795583)
chr2 (122-167)||(43531929-43531974)
chr2 (110-166)||(36006263-36006319)
[»] scaffold0548 (1 HSPs)
scaffold0548 (110-173)||(3386-3449)
[»] chr3 (6 HSPs)
chr3 (110-169)||(33241845-33241904)
chr3 (110-168)||(33419896-33419954)
chr3 (113-171)||(37285905-37285963)
chr3 (122-168)||(48618848-48618894)
chr3 (110-167)||(54111417-54111474)
chr3 (134-167)||(54341204-54341237)
[»] scaffold0015 (1 HSPs)
scaffold0015 (122-168)||(47442-47488)
[»] chr6 (10 HSPs)
chr6 (122-167)||(22793634-22793679)
chr6 (110-168)||(17342888-17342946)
chr6 (110-168)||(22793301-22793359)
chr6 (119-168)||(10567824-10567873)
chr6 (122-177)||(34829572-34829627)
chr6 (110-168)||(11122255-11122313)
chr6 (122-168)||(34829922-34829968)
chr6 (122-167)||(28645269-28645314)
chr6 (110-167)||(32629064-32629121)
chr6 (110-170)||(6273615-6273675)
[»] chr5 (6 HSPs)
chr5 (110-173)||(33992330-33992393)
chr5 (110-168)||(33992690-33992748)
chr5 (110-167)||(16642751-16642808)
chr5 (110-167)||(25508159-25508216)
chr5 (113-167)||(19328409-19328463)
chr5 (110-168)||(19935434-19935492)
[»] scaffold0400 (1 HSPs)
scaffold0400 (122-168)||(9939-9985)
[»] scaffold0365 (1 HSPs)
scaffold0365 (122-168)||(10582-10628)
[»] scaffold0056 (2 HSPs)
scaffold0056 (134-168)||(63102-63136)
scaffold0056 (122-174)||(62720-62772)
[»] scaffold0045 (1 HSPs)
scaffold0045 (119-168)||(29610-29659)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41279923 - 41280035
Alignment:
Q  1 aggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctttgactaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41279923 aggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctttgactaatttt 41280022  T
Q  101 atttcctttaaca 113  Q
    |||||||||||||    
T  41280023 atttcctttaaca 41280035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41286979 - 41287091
Alignment:
Q  1 aggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctttgactaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286979 aggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctttgactaatttt 41287078  T
Q  101 atttcctttaaca 113  Q
    |||| ||||||||    
T  41287079 attttctttaaca 41287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 7460629 - 7460560
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttttattaa 179  Q
    ||||||| ||||||||||||||  |||||||||||||||||| |||||||| |||||| |||||| ||||    
T  7460629 aacataagggatcaacttgaaaactaaaataaacataagggatcaaacatgaaattaaatctttttttaa 7460560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 24185727 - 24185670
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| ||||||||||| |||||||||||  || ||||||||||||||||||    
T  24185727 aacataaaggaccaacttgaaacctaaaataaacacgagtgaccaaacatgcaattaa 24185670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 24188224 - 24188282
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| ||||||||||| ||| ||||||||||| || ||||||||||||||||    
T  24188224 aacataagggaccaacttgaaacctaatataaacataagcgatcaaacatgcaattaag 24188282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 7460908 - 7460953
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||    
T  7460908 caacttgaaaactaaaataaacataagggatcaaacatgcaattaa 7460953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 43511205 - 43511262
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||| ||||| ||| |||||||||||||||||||| || ||||||| |||||||    
T  43511205 aacataaaagatcatcttaaaacttaaaataaacataagagatcaaacatacaattaa 43511262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 43510938 - 43510878
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||| | || ||||| |||||| ||||||||||||| ||||||||||| |||||||||    
T  43510938 aacataatgaattaacttaaaacttgaaataaacataagagaccaaacatgtaattaagtc 43510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 17814022 - 17813971
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    ||||||||||| ||||||||||||||| || |||||||| ||||||| ||||    
T  17814022 caacttgaaacctaaaataaacataagagatcaaacatggaattaagccttt 17813971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 22566337 - 22566303
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  22566337 taaaataaacataagggatcaaacatgcaattaag 22566303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 6376424 - 6376375
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacat 159  Q
    ||||||||| | |||||| |||| |||||||||||||| |||||||||||    
T  6376424 aacataaagaaccaacttaaaacctaaaataaacataaaggaccaaacat 6376375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 6376714 - 6376771
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||| || |||||| |||| |||||||||||||| ||| ||||| |||||||||    
T  6376714 aacataaatgaccaacttaaaacctaaaataaacataacggatcaaacttgcaattaa 6376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 10017960 - 10018005
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||| |||| ||||||||||||||| |||||||||| |||||||    
T  10017960 caacttaaaacctaaaataaacataagagaccaaacatacaattaa 10018005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 34535728 - 34535695
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||||||||||||| |||||||||||||||    
T  34535728 taaaataaacataagggatcaaacatgcaattaa 34535695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 36469895 - 36469946
Alignment:
Q  116 aaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||| ||| |||||||| |||||||||||||| || ||||||||||||||||    
T  36469895 aaggaccaatttgaaact-aaaataaacataagagatcaaacatgcaattaag 36469946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 19524396 - 19524492
Alignment:
Q  6 tctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttgatttctttgactaattttat 102  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||    
T  19524396 tctaagggatgcaataattatgacaatactacaatcatataattacaaatgaatattgttaattatataaaatgttgatatctttgactaactttat 19524492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 45505414 - 45505481
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttttatt 177  Q
    ||||||| ||| ||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||    
T  45505414 aacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagtcatttatt 45505481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 17524262 - 17524198
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctttt 174  Q
    ||||||| ||| ||||||||||  |||||||||||||||||| |||||||||||||||| |||||    
T  17524262 aacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcctttt 17524198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 11306608 - 11306671
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    ||||||| ||| ||||||||||  |||||||||||||||||| |||||||||||||||| ||||    
T  11306608 aacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagccttt 11306671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 18415041 - 18415099
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||| ||||||||||||||||  |||||||||||||||||| ||||||| ||||||||    
T  18415041 aacatgaaggatcaacttgaaaactaaaataaacataagggatcaaacatacaattaag 18415099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 31141737 - 31141679
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||| || ||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  31141737 aacataaatgaccaacttgaaacctaagataaacatacgggaccaaacatgcaattaag 31141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 31143753 - 31143811
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| |||||||| |||||| |||||||||||  ||||||||||||||||||||||    
T  31143753 aacataagggatcaacatgaaacctaaaataaacaccagggaccaaacatgcaattaag 31143811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 49983851 - 49983793
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| ||||||||||  |||||||| || |||||||||||||||||||||||    
T  49983851 aacataaaggaccaacttgaaatctaaaataagcacaagggaccaaacatgcaattaag 49983793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 48846068 - 48846128
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||| ||| |||||| |||  |||||||||||||||||| ||||||||||||||||||    
T  48846068 aacataagggaccaacttaaaaagtaaaataaacataagggatcaaacatgcaattaagtc 48846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 4592722 - 4592765
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaatt 165  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  4592722 caacttaaaacctaaaataaacataagggaccaaacatgcaatt 4592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 43913449 - 43913391
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtct 171  Q
    |||| ||| |||||| |||  |||||||||||||||||| |||||||||||||||||||    
T  43913449 ataagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaagtct 43913391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 49984165 - 49984211
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  49984165 caacatgaaacctaaaataaacataagggatcaaacatgcaattaag 49984211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 46397356 - 46397295
Alignment:
Q  118 ggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttttattaa 179  Q
    ||||||||| ||||| ||||||||| |||  ||| |||||||||||||||||||||| ||||    
T  46397356 ggatcaactcgaaacctaaaataaatatataggatcaaacatgcaattaagtctttttttaa 46397295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 52485400 - 52485343
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| |||||||||| |||  |||||||||||||| ||| |||||||||||||||    
T  52485400 aacataagggatcaacttaaaaactaaaataaacataatggatcaaacatgcaattaa 52485343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 24672010 - 24671950
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    |||||||| ||||||||| |||  |||||||||| |||||||||||| || ||||||||||    
T  24672010 aacataaatgatcaacttaaaatctaaaataaacttaagggaccaaatatacaattaagtc 24671950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 4416534 - 4416476
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| |||||||||| |||  |||||||||  ||||||| ||||||||||||||||    
T  4416534 aacataagggatcaacttaaaaactaaaataaatgtaagggatcaaacatgcaattaag 4416476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 5665798 - 5665856
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| |||  |||||||||| ||||||||||||||| || || |||||||||||||    
T  5665798 aacataagggacaaacttgaaacctaaaataaacataagagatcagacatgcaattaag 5665856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 5688760 - 5688806
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||    
T  5688760 caacttaaaacttaaagtaaacattagggaccaaacatgaaattaag 5688806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 37724758 - 37724808
Alignment:
Q  118 ggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||| |||  ||||||||||||||| || ||||||||||||||||    
T  37724758 ggatcaacttaaaaactaaaataaacataagagatcaaacatgcaattaag 37724808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 45170894 - 45170928
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  45170894 taaaataaacataagggatcaaacatgcaattaag 45170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 45505093 - 45505059
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  45505093 taaaataaacataagggatcaaacatgcaattaag 45505059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 4416832 - 4416889
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||  ||||||||||||||| || |||||||||||||||    
T  4416832 aacataagggaccaacttaaaaactaaaataaacataagagatcaaacatgcaattaa 4416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 36752917 - 36752860
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||| ||||| ||| || ||| ||||||||||||||||||| |||||||||| ||||    
T  36752917 aacatgaaggaccaatttaaaaattaaaataaacataagggatcaaacatgcatttaa 36752860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 20268952 - 20268892
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||| ||| |||||| |||  ||||||||||||| |  ||||||||||||||||||||    
T  20268952 aacataagggaccaacttaaaatctaaaataaacatacgaaaccaaacatgcaattaagtc 20268892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 48171791 - 48171851
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48171791 aacataaaggaccaacttgaaacctaaaataaacataagggaccaaacatgcaattaagtc 48171851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 48171500 - 48171440
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||| ||| |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  48171500 aacataagggaccaacctgaaacctaaaataaacataagggatcaaacatgcaattaagtc 48171440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 22792336 - 22792287
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtct 171  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  22792336 caacttaaaacttaaaataaacatatgggaccaaatatgcaattaagtct 22792287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 25622650 - 25622601
Alignment:
Q  126 ttgaaacttaaaataaacataagggaccaaacatgcaattaagtctttta 175  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  25622650 ttgaaacctaaaataaacataagggactaaacatgcaattaagcctttta 25622601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 42604685 - 42604630
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| | ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  42604685 ataaagtaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaag 42604630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 19987392 - 19987334
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| |||||| |||  ||||||||||||| |||| ||||||||||||||||    
T  19987392 aacataaaggaacaacttaaaaactaaaataaacatatgggatcaaacatgcaattaag 19987334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 42604996 - 42605042
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  42604996 caacttgaaaactaaaataaacataagggatcaaacatgcaattaag 42605042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 142857 - 142808
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtct 171  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||||    
T  142857 caacttaaaacctaaaatacacataagggacaaaacatgcaattaagtct 142808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 6043493 - 6043448
Alignment:
Q  123 aacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||    
T  6043493 aacttaaaacctaaaataaatataagggaccaaacatgcaattaag 6043448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 33460240 - 33460297
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| ||||||||||  ||||||||||||||| || |||||||||||||||    
T  33460240 aacataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaa 33460297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 34518022 - 34517965
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||  |||||||||||||||||| |||||||||||||||    
T  34518022 aacataatggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaa 34517965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 143170 - 143226
Alignment:
Q  112 cataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||| |||| |||||| |||| |||||||||||||||||| ||||||| ||||||||    
T  143170 catataggaccaacttaaaacctaaaataaacataagggatcaaacatacaattaag 143226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 35795695 - 35795731
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaagtc 170  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35795695 taaaataaacataaaggaccaaacatgcaattaagtc 35795731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 8718453 - 8718402
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    |||||| |||| ||||||||||| ||| ||||||||||||||||||| ||||    
T  8718453 caacttaaaacctaaaataaacacaagagaccaaacatgcaattaagccttt 8718402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 8718554 - 8718609
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||| ||| |||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  8718554 ataagggaccaacttaaaacctaaaataaacatatgggatcaaacatgcaattaag 8718609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 35795359 - 35795304
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttttatt 177  Q
    ||||||||||  ||||||||||||||| || |||||||||||||||| ||| ||||    
T  35795359 caacttgaaatctaaaataaacataagagatcaaacatgcaattaagccttatatt 35795304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 31872965 - 31873011
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||  |||||||||||||||||| |||| |||||||||||    
T  31872965 caacttgaaaactaaaataaacataagggatcaaatatgcaattaag 31873011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 33459953 - 33459895
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| |||  |||||||||  |||||||||||||||||| ||| ||||||||||||    
T  33459953 aacataagggactaacttgaaaactaaaataaacataagggatcaagcatgcaattaag 33459895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 37245947 - 37245981
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  37245947 taaaataaacataagggatcaaacatgcaattaag 37245981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 14419878 - 14419821
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||| |||||||||||||||| || ||| ||||||||||    
T  14419878 aacataagggaccaacttaaaacctaaaataaacataaggaactaaagatgcaattaa 14419821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 14420153 - 14420194
Alignment:
Q  129 aaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    |||| |||||||||||||||| | ||||||||||||||||||    
T  14420153 aaacctaaaataaacataaggaatcaaacatgcaattaagtc 14420194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 18519656 - 18519701
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||  ||||||||||||||| || |||||||||||||||    
T  18519656 caacttgaaaactaaaataaacataagagatcaaacatgcaattaa 18519701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 22792644 - 22792689
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||| |||| ||||||||||||| |||||||||||| |||||||    
T  22792644 caacttaaaacctaaaataaacatatgggaccaaacatacaattaa 22792689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 31872742 - 31872709
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||||||||||||| |||||||||||||||    
T  31872742 taaaataaacataagggatcaaacatgcaattaa 31872709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 3075292 - 3075324
Alignment:
Q  136 aaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||| ||||||||||||||||    
T  3075292 aaataaacataagggatcaaacatgcaattaag 3075324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 4623455 - 4623513
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  4623455 aacataaaggatcaacttgaaaactaaaataaacataagggatcaaacatgcaattaag 4623513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 4623127 - 4623063
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctttt 174  Q
    ||||||| ||||||| || |||  |||||||||||||||||| ||||||||||||||||||||||    
T  4623127 aacataagggatcaatttaaaaactaaaataaacataagggatcaaacatgcaattaagtctttt 4623063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 7535358 - 7535300
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||| || |||||| |||| ||||||||||||||| |||||||||||||||||||    
T  7535358 aacataaaagaccaacttaaaacgtaaaataaacataagagaccaaacatgcaattaag 7535300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 18935099 - 18935053
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  18935099 caacttaaaacttaaaataaacataagagaccaaacatgcaattaag 18935053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 18935403 - 18935457
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaat 164  Q
    ||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||    
T  18935403 aacataagggaccaacatgaaacctaaaataaacataagggaccaaacatgcaat 18935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 3016048 - 3016093
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  3016048 caacttgaaacctaaaataaacttaagggaccaaacatgcaattaa 3016093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 9710274 - 9710213
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtct 171  Q
    ||||||| ||| |||||| |||  |||||||||||||||||| |||||||||||||||||||    
T  9710274 aacataagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaagtct 9710213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 16049832 - 16049889
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| ||||||||||  |||||||||||||||||| |||||||||||||||    
T  16049832 aacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaa 16049889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 18548596 - 18548539
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||| | |||||| |||| |||||||||||||||| | |||||||||||||||    
T  18548596 aacataaagtaccaacttaaaacctaaaataaacataaggaatcaaacatgcaattaa 18548539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 21446019 - 21445982
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaagtct 171  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  21446019 taaaataaatataagggaccaaacatgcaattaagtct 21445982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 34687812 - 34687755
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||| | |||||| |||| |||||||||||||||||  |||||||||||||||    
T  34687812 aacataaagaaccaacttaaaacctaaaataaacataaggggtcaaacatgcaattaa 34687755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 23871046 - 23871002
Alignment:
Q  123 aacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  23871046 aacttgaaactcaaaataaacataagagaccaaacaagcaattaa 23871002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 7645141 - 7645200
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctt 172  Q
    ||||||||  ||||| |||  |||||||||||||||||| ||||||||| ||||||||||    
T  7645141 ataaaggactaacttaaaaactaaaataaacataagggatcaaacatgcgattaagtctt 7645200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 18429497 - 18429442
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||| ||| ||||||||||  ||||||||||||||| || ||||||||||||||||    
T  18429497 ataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaag 18429442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 34439602 - 34439636
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  34439602 taaaataaacataagggatcaaacatgcaattaag 34439636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 3111520 - 3111463
Alignment:
Q  108 ttaacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaatt 165  Q
    ||||| || |||| ||||||||||| |||||||||| || |||||||| |||||||||    
T  3111520 ttaacttagaggaccaacttgaaacctaaaataaacgtaggggaccaatcatgcaatt 3111463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 7644837 - 7644774
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctttt 174  Q
    ||||||| ||| |||||| |||  |||||||||||||| ||| |||||||||||||||| |||||    
T  7644837 aacataagggaccaacttaaaaactaaaataaacataa-ggatcaaacatgcaattaagcctttt 7644774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 43971880 - 43971926
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  43971880 caacttgaaacctaaaataaacataagggaccaaacatgcaattaag 43971926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 26845536 - 26845591
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaatt 165  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  26845536 aacataagggaccaacttaaaacctaaaataaacataagggaccaaacatgcaatt 26845591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 14473564 - 14473506
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| |||||  |||||||||||||||| ||| |||||||||||||||||||    
T  14473564 aacataagggaccaactcaaaacttaaaataaacaaaagcgaccaaacatgcaattaag 14473506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 32622264 - 32622218
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  32622264 caacttgaaaactaaaataaacataagggatcaaacatgcaattaag 32622218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 24015869 - 24015813
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||||||||||||||  ||||||||||||||||||  ||||||||||||||    
T  24015869 aacataagggatcaacttgaaaactaaaataaacataaggga-taaacatgcaattaa 24015813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 32622543 - 32622600
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||| ||||| |||||| |||  |||||||||||||||||| |||||||||||||||    
T  32622543 aacatgaaggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaa 32622600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 36122064 - 36122108
Alignment:
Q  123 aacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||    
T  36122064 aacttgaaacctaatataaacgtaagggaccaaacatgcaattaa 36122108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 3217343 - 3217280
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    ||||||| ||| |||| |||||| ||| ||| ||| ||||||||||||||||||||||| ||||    
T  3217343 aacataagggaccaacatgaaacctaagatatacacaagggaccaaacatgcaattaagccttt 3217280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 10307616 - 10307663
Alignment:
Q  116 aaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaa 163  Q
    ||||| |||||| |||| |||||||||||||||| |||||||||||||    
T  10307616 aaggaccaacttcaaacataaaataaacataaggcaccaaacatgcaa 10307663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 13140620 - 13140675
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||| || |||||| |||  ||||||||||| |||||||||||||||||||||||    
T  13140620 ataaatgaccaacttaaaatctaaaataaacacaagggaccaaacatgcaattaag 13140675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 15988069 - 15988013
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| ||||||||||||  ||||||||||||| | |||||||||||||||||    
T  15988069 aacataagggaccaacttgaaact--aaataaacataagtggccaaacatgcaattaag 15988013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 13140348 - 13140290
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||| || |||||| |||| |||||||||||||||| | ||||||||||| ||||    
T  13140348 aacataaaagaccaacttaaaacctaaaataaacataaggcatcaaacatgcaagtaag 13140290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 14424285 - 14424239
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| ||||||||||||||| | | |||||||||||||||    
T  14424285 caacttgaaacctaaaataaacataagaggctaaacatgcaattaag 14424239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 27956759 - 27956725
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  27956759 taaaataaacataagggatcaaacatgcaattaag 27956725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 29526654 - 29526592
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctt 172  Q
    ||||||| ||| ||| ||||||  |||||||||||||| ||| | ||||||||||||||||||    
T  29526654 aacataagggaccaaattgaaaactaaaataaacataaaggatccaacatgcaattaagtctt 29526592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 29526948 - 29527006
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| |||||| ||| |||||||||||||||||||  |||||| ||||||||    
T  29526948 aacataatggaccaacttaaaaattaaaataaacataagggattaaacatacaattaag 29527006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 38573290 - 38573348
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||  ||||||||| |||  |||||||||||||| |||| |||||||||||||||    
T  38573290 aacataattgatcaacttaaaaactaaaataaacataaaggacaaaacatgcaattaag 38573348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 39060342 - 39060308
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  39060342 taaaataaacataagggatcaaacatgcaattaag 39060308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 43513925 - 43513971
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| ||| |||||||||||||| ||||||||||| ||||    
T  43513925 caacttgaaacctaatataaacataagggatcaaacatgcaagtaag 43513971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 6795526 - 6795583
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||| ||||||||| ||| |||| |||||||||||||||    
T  6795526 aacataatggaccaacttaaaacctaaaataaatataggggatcaaacatgcaattaa 6795583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 43531974 - 43531929
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| |||||||||| ||||||||| | |||||||||||    
T  43531974 caacttgaaacctaaaataaacgtaagggaccgatcatgcaattaa 43531929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 36006263 - 36006319
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaatta 166  Q
    |||||||| || |||||| |||||||||||||| |||||| | ||| ||||||||||    
T  36006263 aacataaatgaccaacttaaaacttaaaataaaaataaggaatcaatcatgcaatta 36006319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 3386 - 3449
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    ||||||| ||| ||||||||||  |||||||||||||||||| |||||||||||||||| ||||    
T  3386 aacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagccttt 3449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 33241904 - 33241845
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagt 169  Q
    ||||||| ||| ||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  33241904 aacataagggaacaacttgaaacctaaaataaacttaagggaccaaccatgcaattaagt 33241845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 33419896 - 33419954
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| |||||| |||  |||||||||||||||||| ||||||||||||||||    
T  33419896 aacataagggaccaacttaaaaagtaaaataaacataagggatcaaacatgcaattaag 33419954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 37285905 - 37285963
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtct 171  Q
    |||| ||| |||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  37285905 ataagggaccaacttaaaacctaaaataaacatagggaactaaacatgcaattaagtct 37285963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 48618848 - 48618894
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||| | ||||||||| |||||||| ||||||||||||||||    
T  48618848 caacttgaagcctaaaataaatataagggatcaaacatgcaattaag 48618894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 54111474 - 54111417
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||||||||||| | |||  ||||||| | |||||||| |||||||||||||||    
T  54111474 aacataaaggatcaacataaaatgtaaaatacatataagggatcaaacatgcaattaa 54111417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 54341237 - 54341204
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||||||||||||| |||||||||||||||    
T  54341237 taaaataaacataagggatcaaacatgcaattaa 54341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 47442 - 47488
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||    
T  47442 caacttaaaacctaaaataaacataagggaccaaacatgcaattaag 47488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 22793634 - 22793679
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||    
T  22793634 caacttgaaacctaaaataaacataagggatcaaacatgcaattaa 22793679  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 17342946 - 17342888
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| ||||||||||| ||||||||||||| ||||  |||||||||||||||    
T  17342946 aacataagggaccaacttgaaacctaaaataaacatacgggattaaacatgcaattaag 17342888  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 22793359 - 22793301
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| ||||||||||| ||||||||||||||||| ||||| || ||||||||    
T  22793359 aacataagggaccaacttgaaacctaaaataaacataaggggccaaatatccaattaag 22793301  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 10567824 - 10567873
Alignment:
Q  119 gatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||||| ||||||||||||||||||| |||| |||||||||||    
T  10567824 gatcaatttgaaaattaaaataaacataagggatcaaatatgcaattaag 10567873  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 34829627 - 34829572
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttttatt 177  Q
    |||||| ||||||||||||||||||| ||| ||||| |||||||||  ||||||||    
T  34829627 caacttaaaacttaaaataaacataaaggatcaaacctgcaattaaaccttttatt 34829572  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 11122255 - 11122313
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||| || ||||||  ||| |||||||||||||||||| ||||||| ||||||||    
T  11122255 aacataaatgaccaacttacaacctaaaataaacataagggatcaaacatacaattaag 11122313  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 34829922 - 34829968
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||| ||||||||||||||| || ||||||||||||||||    
T  34829922 caacttaaaacctaaaataaacataagagatcaaacatgcaattaag 34829968  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 28645314 - 28645269
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||    
T  28645314 caacttgaaacataaaataagtgtaagggaccaaacatgcaattaa 28645269  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 32629121 - 32629064
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||||||   ||||| |||| |||||||||||||||||| |||||||| ||||||    
T  32629121 aacataaaggtctaacttaaaacctaaaataaacataagggatcaaacatgtaattaa 32629064  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 6273675 - 6273615
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtc 170  Q
    ||||||||| | ||||||||||| ||||||||||||||  ||  |||||||||||| ||||    
T  6273675 aacataaagaaccaacttgaaacgtaaaataaacataatagattaaacatgcaatttagtc 6273615  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 33992393 - 33992330
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaagtcttt 173  Q
    ||||||| |||  |||||||||  |||||||||||||||||| |||||||||||||||| ||||    
T  33992393 aacataagggacgaacttgaaaactaaaataaacataagggatcaaacatgcaattaagccttt 33992330  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 33992690 - 33992748
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||||||| ||| || |||  |||||||||||||||||| ||||||||||||||||    
T  33992690 aacataaaggaccaatttaaaaactaaaataaacataagggatcaaacatgcaattaag 33992748  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 16642808 - 16642751
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||| |||||||||||||||||| ||||| |||||||||    
T  16642808 aacataagggaccaacttaaaacctaaaataaacataagggatcaaacttgcaattaa 16642751  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 25508159 - 25508216
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    ||||||| ||| |||||| |||| |||||| ||| |||||||||||||||||||||||    
T  25508159 aacataagggagcaacttaaaacctaaaatcaacttaagggaccaaacatgcaattaa 25508216  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 19328463 - 19328409
Alignment:
Q  113 ataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaa 167  Q
    |||||||| |||||| |||  |||||||||||||||||| ||| |||||||||||    
T  19328463 ataaaggaccaacttaaaaactaaaataaacataagggatcaatcatgcaattaa 19328409  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 19935492 - 19935434
Alignment:
Q  110 aacataaaggatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    ||||||| ||| |||||| ||||  |||||||||||||| |||| ||||||||||||||    
T  19935492 aacataatggaccaacttaaaaccaaaaataaacataagagacccaacatgcaattaag 19935434  T

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Target: scaffold0400 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 9939 - 9985
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||| ||||||||||||||| || ||||||||||||||||    
T  9939 caacttaaaacctaaaataaacataagagatcaaacatgcaattaag 9985  T

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Target: scaffold0365 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 10582 - 10628
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||| |||| ||||||||||||||| || ||||||||||||||||    
T  10582 caacttaaaacctaaaataaacataagagatcaaacatgcaattaag 10628  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 63102 - 63136
Alignment:
Q  134 taaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||||||| ||||||||||||||||    
T  63102 taaaataaacataagggatcaaacatgcaattaag 63136  T

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Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 62772 - 62720
Alignment:
Q  122 caacttgaaacttaaaataaacataagggaccaaacatgcaattaagtctttt 174  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||| |||||    
T  62772 caacttgaaaattgaaataaatataagggatcaagcatgcaattaagcctttt 62720  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 29659 - 29610
Alignment:
Q  119 gatcaacttgaaacttaaaataaacataagggaccaaacatgcaattaag 168  Q
    |||||||||||||  ||||||||||||||| || |||||||| |||||||    
T  29659 gatcaacttgaaaactaaaataaacataagagatcaaacatgtaattaag 29610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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