View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14169_low_3 (Length: 477)
Name: NF14169_low_3
Description: NF14169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14169_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 46 - 416
Target Start/End: Original strand, 5990654 - 5991026
Alignment:
| Q |
46 |
gtatatagaatcacgagaaaagttcatcataatgtatatggaccattcgtactaaagatcttaaccgtatttgcattatgcaaagatataaccgtactag |
145 |
Q |
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| T |
5990654 |
gtatatagaatcatgagaaaagttcatcataatgtatatggaccattcgtactaaagatcttaaccgtatttgcattatgcaaagatataaccgtactag |
5990753 |
T |
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| Q |
146 |
tttacataccttgtgttcttcatttctactaaatttagaaagttggaaattgaaactttatgttgacacactaccatttgttctctacgttgacatagaa |
245 |
Q |
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| T |
5990754 |
tttacataccttgtgttcttcatttctactaaatttagaaagttggaaattgaaactttatgttgacacactaccatttgttatctacgttgacacagaa |
5990853 |
T |
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| Q |
246 |
acccactcccacatgtctcttgattgagttattaagtatgaagcacatggagaaaagtttcctctggcatgtttttcaac--tcttgtaacctttttgct |
343 |
Q |
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| T |
5990854 |
tcccactcccacatgtctcttgattgagttattaactatgaagcacatggagaaaagtttcctctggcaaggttttcaacgatcttgtaacctttttgct |
5990953 |
T |
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| Q |
344 |
taaggattgatatcctctatggttttcaaaagaaatggttaaagactccctttgatgtgatttgtatttaaaa |
416 |
Q |
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| T |
5990954 |
taaggattgatatcctctatggttttcaaaagaaatggttaaagactccctttgatgtgatttgtatttaaaa |
5991026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 5991064 - 5991110
Alignment:
| Q |
423 |
tcaaacttgaggtcctaatatcattttttgtgtctatctttcttctc |
469 |
Q |
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| T |
5991064 |
tcaaatttgaggtcctaatatcattttttgtgtctatctttcttctc |
5991110 |
T |
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