View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1416_low_1 (Length: 454)
Name: NF1416_low_1
Description: NF1416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1416_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 3863626 - 3864053
Alignment:
| Q |
13 |
catcacatattaaggagtctatgaacaactgtgtttttaattatttgatcaataagtttatcatatctcgttcaatcaaatagtgtgatttactacttat |
112 |
Q |
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| T |
3863626 |
catcacatattaaggagtctatgaacaactgtgtttttaattatttgatcaataagtttatcatatctcgttcaatcaaatagtgtgatttactacttat |
3863725 |
T |
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| Q |
113 |
ccaatagtagaagttaatttgtgtatgatgtaggatttattttatttgcacatcatagaattgacatatactacttcaatatttaatacctctcttgagt |
212 |
Q |
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| T |
3863726 |
ccaatagtagaagttaatttgtgtatgatgcaggatttatcttatttgcacatcatagaattgacatatactacttcaatatttaatacctctcttgagt |
3863825 |
T |
|
| Q |
213 |
gtggttacgttctagctattttgttccgtatcctagtgaacaattagcacaacgactgctgccaaattgtctattatgaatatgaaacagctttggacca |
312 |
Q |
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| T |
3863826 |
gtg-----gttctagctattttgttccgtatcctagtgaacaattagcacaacgactgctgccaaattgtctattatgaatatgaaacagctttggacca |
3863920 |
T |
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| Q |
313 |
cactttggacagagaacgaatcagtttcatttgtccgcaaccaacttgggagaaa--------ggtatgatattgataaatgataggtacgtaactacat |
404 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3863921 |
cactttggacaaagaacgaatcagtttcatttgtccgcaaccaacttgggagaaaggtgtcttggtatgatattgataaatgataggtacgtaactacat |
3864020 |
T |
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| Q |
405 |
acaacttcagcataaagagtacctcagtccctt |
437 |
Q |
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| T |
3864021 |
acaacttcagcataaagagtacctcagttcctt |
3864053 |
T |
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