View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1416_low_2 (Length: 447)
Name: NF1416_low_2
Description: NF1416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1416_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 5593556 - 5593141
Alignment:
| Q |
19 |
gtatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593556 |
gtatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttct |
5593457 |
T |
|
| Q |
119 |
tcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagt |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593456 |
tcttagagatggaatctatgataaagccatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagt |
5593357 |
T |
|
| Q |
219 |
tccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593356 |
tccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatc |
5593257 |
T |
|
| Q |
319 |
gacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593256 |
gacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaa |
5593157 |
T |
|
| Q |
419 |
gtgtttttctttgttc |
434 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5593156 |
gtgtttttctttgttc |
5593141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 120 - 434
Target Start/End: Complemental strand, 5587219 - 5586908
Alignment:
| Q |
120 |
cttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
219 |
Q |
| |
|
|||| ||||||||| ||| || ||| ||||||||| ||| ||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
5587219 |
cttaaatatggaatttataatcaagaaatggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtg |
5587120 |
T |
|
| Q |
220 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcg |
319 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| | |||| ||| ||| ||||||||||| || || |||| |
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| T |
5587119 |
ccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctac---ctctgcaaaatctaattacaatccctatggaatcg |
5587023 |
T |
|
| Q |
320 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaag |
419 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5587022 |
actttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaag |
5586923 |
T |
|
| Q |
420 |
tgtttttctttgttc |
434 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5586922 |
tgtttttctttgttc |
5586908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 114 - 397
Target Start/End: Complemental strand, 5573694 - 5573414
Alignment:
| Q |
114 |
tttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcc |
213 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||||||||| ||| ||| || ||||||||||||||||||| | |||| ||||||||||||||| |
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|
| T |
5573694 |
tttcttcttagagatggaatctataatcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatct |
5573595 |
T |
|
| Q |
214 |
caagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacg |
313 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| ||| ||| |||||||| ||||| | |
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|
| T |
5573594 |
caagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttc---ctacctctgcaaaatctaattacaaaccttatg |
5573498 |
T |
|
| Q |
314 |
ggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
397 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
5573497 |
gaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 146 - 410
Target Start/End: Complemental strand, 5576824 - 5576562
Alignment:
| Q |
146 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
245 |
Q |
| |
|
|||||||| || ||| |||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5576824 |
catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc |
5576725 |
T |
|
| Q |
246 |
tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
345 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | |||| ||| ||| |||||||| ||||| || || ||||||||||||||||||||||||||| |
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|
| T |
5576724 |
tttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaaga |
5576628 |
T |
|
| Q |
346 |
tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
410 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
|
|
| T |
5576627 |
tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 5582971 - 5582835
Alignment:
| Q |
112 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
211 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5582971 |
attttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
5582872 |
T |
|
| Q |
212 |
cccaagttccttgtctttttatctttggagattcttt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5582871 |
cccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
299 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
391 |
Q |
| |
|
||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 112 - 391
Target Start/End: Original strand, 12051663 - 12051943
Alignment:
| Q |
112 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
211 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| || || |||| ||| ||||| |
|
|
| T |
12051663 |
attttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaat |
12051762 |
T |
|
| Q |
212 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatcctta |
311 |
Q |
| |
|
||||| ||| |||| ||||||||||| || ||||||| |||| ||| ||||||||| ||||||| ||| || | | || ||||||| ||||| |
|
|
| T |
12051763 |
atcaagtacctagtctgtttatctttggggactctttatatgatagtgaaaacaacaataaccttc---ctacctttgcttaatttgattacaaacctta |
12051859 |
T |
|
| Q |
312 |
cgggatcga---cttcc-cgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
391 |
Q |
| |
|
|| ||||| ||||| || | ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
12051860 |
tggaatcgattccttcctcgctcggcgcaaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
341 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
408 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
|
|
| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
351 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 12064543 - 12064623
Alignment:
| Q |
108 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt |
188 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| |
|
|
| T |
12064543 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactattt |
12064623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
| Q |
108 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
156 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
12059091 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
212 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
275 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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