View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1416_low_3 (Length: 418)

Name: NF1416_low_3
Description: NF1416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1416_low_3
NF1416_low_3
[»] chr3 (7 HSPs)
chr3 (149-400)||(2833336-2833589)
chr3 (119-204)||(34213151-34213236)
chr3 (122-207)||(26982040-26982125)
chr3 (143-209)||(1045402-1045468)
chr3 (119-209)||(41640822-41640912)
chr3 (161-198)||(1762040-1762077)
chr3 (119-207)||(4778032-4778120)
[»] chr5 (6 HSPs)
chr5 (60-207)||(27639396-27639543)
chr5 (1-54)||(27639276-27639329)
chr5 (117-206)||(3465307-3465396)
chr5 (127-207)||(41650525-41650605)
chr5 (170-211)||(33672060-33672101)
chr5 (121-203)||(33861926-33862007)
[»] chr1 (9 HSPs)
chr1 (119-206)||(13297595-13297682)
chr1 (108-207)||(44503950-44504049)
chr1 (121-207)||(21926619-21926704)
chr1 (87-207)||(40799651-40799771)
chr1 (117-207)||(52372670-52372760)
chr1 (80-209)||(15274345-15274474)
chr1 (87-206)||(9644372-9644491)
chr1 (119-203)||(25410579-25410663)
chr1 (146-209)||(51871201-51871264)
[»] chr4 (9 HSPs)
chr4 (110-192)||(4866794-4866876)
chr4 (108-192)||(50655070-50655154)
chr4 (119-207)||(23012347-23012435)
chr4 (78-192)||(45068090-45068204)
chr4 (78-188)||(19469667-19469776)
chr4 (121-207)||(30251406-30251492)
chr4 (146-209)||(48309656-48309719)
chr4 (117-207)||(24065104-24065194)
chr4 (117-198)||(44616665-44616746)
[»] chr2 (3 HSPs)
chr2 (119-206)||(43411515-43411602)
chr2 (119-207)||(41074569-41074656)
chr2 (146-209)||(10994430-10994493)
[»] chr6 (3 HSPs)
chr6 (117-192)||(52009-52084)
chr6 (81-188)||(9557337-9557444)
chr6 (146-209)||(9755698-9755761)
[»] chr7 (7 HSPs)
chr7 (119-192)||(40188193-40188266)
chr7 (119-207)||(23176908-23176996)
chr7 (147-207)||(46028474-46028534)
chr7 (148-209)||(33743470-33743531)
chr7 (119-206)||(12258376-12258463)
chr7 (146-207)||(26557857-26557918)
chr7 (146-211)||(33888612-33888677)
[»] chr8 (8 HSPs)
chr8 (119-207)||(24604837-24604925)
chr8 (117-207)||(7656805-7656895)
chr8 (108-207)||(42032733-42032832)
chr8 (77-198)||(32073896-32074017)
chr8 (117-192)||(34152023-34152098)
chr8 (146-209)||(36650463-36650526)
chr8 (117-206)||(42241233-42241322)
chr8 (161-207)||(41927020-41927066)
[»] scaffold0329 (1 HSPs)
scaffold0329 (117-207)||(18430-18520)
[»] scaffold0042 (1 HSPs)
scaffold0042 (138-206)||(83243-83311)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 149 - 400
Target Start/End: Original strand, 2833336 - 2833589
Alignment:
Q  149 ctagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactgacattgcctcacaaaaagatgaagaactttattttcttc 248  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  2833336 ctagcagggcacttagccatgaaccacttccaagctaagagtttcactctatctaccactgacattgcctcacaaaaagatgaagaactttattttcttc 2833435  T
Q  249 tcgcatttttccctaatgtgagaagaaaatatgtatttacaac---nnnnnnnaaactatatttttgaagtttcgaacacgatatctaggggtgcgcaag 345  Q
    |||||||||||||||||| |||||||||||||||||||||| |           |||||| |||||||||||||||| ||| ||||||| | ||||||||    
T  2833436 tcgcatttttccctaatgcgagaagaaaatatgtatttacacctttttttttttaactatttttttgaagtttcgaatacggtatctagagatgcgcaag 2833535  T
Q  346 ggacggataataaccaaccctagccatgtcctaaagtttgattggatgattttga 400  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2833536 ggacggataataaccaaccctagccatgtcctaaa-tttgattggatgattttga 2833589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 34213236 - 34213151
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccac 204  Q
    |||||||| ||||| ||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||    
T  34213236 tgcacctcacactcgtgataagtgcatgaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctatccac 34213151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 26982040 - 26982125
Alignment:
Q  122 acctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  26982040 acctcccactcatgataggtgcaggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccac 26982125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 1045402 - 1045468
Alignment:
Q  143 caagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    |||||||||||||| || ||||||| |||||||||||||||| ||||||| || || ||||||||||    
T  1045402 caagaactagcagggcacttagccaggaaccacttccaagctgagagtttaaccctatccaccactg 1045468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 41640912 - 41640822
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||||||||||    || ||| ||||||||||| || ||||||   ||||||||||||| ||||||||| ||||||||||||||||    
T  41640912 tgcacctcccactcatagggagagcaggaactagcagggcacttagcccgaaaccacttccaagttaagagtttaactctgtccaccactg 41640822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 1762040 - 1762077
Alignment:
Q  161 ttagccatgaaccacttccaagctaagagtttcactct 198  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  1762040 ttagccatgaaccacttccaagctaagagtttcgctct 1762077  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 4778120 - 4778032
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||||||    || ||| | ||||||||| ||  |||||  ||||||||||||| |||||||||| ||||| ||||||||    
T  4778120 tgcacctcccactcatagagagagcagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccaccac 4778032  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 27639396 - 27639543
Alignment:
Q  60 cgcgcgaaccaaggtaggccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggaca 159  Q
    |||| ||||||||||||||||||||||||||||||||| |||| | |||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  27639396 cgcgtgaaccaaggtaggccaccaccacaaaaccctactaatttcagtaaaggacgggttgcacctcctactcatgataagtgcaagaactagcaggaca 27639495  T
Q  160 tttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||||||||||||||||||| |||  |||| ||||||||    
T  27639496 tttagccatgaaccacttccaagctaagaattttgctctatccaccac 27639543  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27639276 - 27639329
Alignment:
Q  1 caaaaagagcacaaaacacctgccaccaaaggaggaaggccaagagagaaccca 54  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27639276 caaaaagagcgcaaaacacctgccaccaaaggaggaaggccaagagagaaccca 27639329  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 3465307 - 3465396
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    ||||||||||||||||||| |||||||| ||||||| || ||  || |||| ||| ||||||||||||||||||||| |||| |||||||    
T  3465307 gttgcacctcccactcatggtaagtgcaggaactagtagaacgcttcgccaagaaacacttccaagctaagagtttcgctctatccacca 3465396  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 41650605 - 41650525
Alignment:
Q  127 ccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||| |||||||| || |||||||  || ||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  41650605 ccactcatggtaagtgcaggagctagcagagcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 41650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 33672101 - 33672060
Alignment:
Q  170 aaccacttccaagctaagagtttcactctgtccaccactgac 211  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  33672101 aaccacttccaagctaagagtttaactttgtccaccactgac 33672060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 33862007 - 33861926
Alignment:
Q  121 cacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtcca 203  Q
    |||||||||||||||| ||| ||| |||||| |||| || ||||||  || |||||||||||| || ||||||||||| ||||    
T  33862007 cacctcccactcatgaaaagagcaggaactaccagggcacttagccgggagccacttccaagccaa-agtttcactctatcca 33861926  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 13297682 - 13297595
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||    
T  13297682 tgcacctcccactcatgataagtgcaggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 44503950 - 44504049
Alignment:
Q  108 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||| || |||||||||||||||||| ||| ||| |||||| || |||| |||| |||||||||||||||||||||||| |||||| | ||||||||    
T  44503950 aaaggacgagctgcacctcccactcatgaaaagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttcactttatccaccac 44504049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 21926704 - 21926619
Alignment:
Q  121 cacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||||||||||  || ||||||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  21926704 cacctcccactcatgataagaacatgaactagcagggcacttagcca-gaaccacttccaggctaagagtttcactctatccaccac 21926619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 40799771 - 40799651
Alignment:
Q  87 caaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaa 186  Q
    |||||||||||| || || | ||||||| || |||||||||||||||||| ||| |||||||||||||   || ||||| | |||| |||| ||||| ||    
T  40799771 caaaaccctaccgatgccagcaaaggacgagctgcacctcccactcatgaaaagagcaagaactagcaatgcacttagctaggaacaactttcaagccaa 40799672  T
Q  187 gagtttcactctgtccaccac 207  Q
    |||||||||||| ||||||||    
T  40799671 gagtttcactctatccaccac 40799651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 52372760 - 52372670
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||||||||||||||||| | ||| ||| ||||||||||| ||  |||||| |||||||||| |||||||||||||| |||| ||||||||    
T  52372760 gttgcacctcccactcataaaaagagcaggaactagcagggcacctagccaggaaccacttctaagctaagagtttcgctctatccaccac 52372670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 15274474 - 15274345
Alignment:
Q  80 accaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttcc 179  Q
    ||||||||||||||||||| |||||   | ||||||   ||||||||||||||||    ||  || |||||||||||||| ||||| | ||| ||||| |    
T  15274474 accaccacaaaaccctaccgattccaacacaggacagactgcacctcccactcatagagagaacatgaactagcaggacacttagctaggaatcacttac 15274375  T
Q  180 aagctaagagtttcactctgtccaccactg 209  Q
    ||||||| ||||||||||||||||||||||    
T  15274374 aagctaaaagtttcactctgtccaccactg 15274345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 9644491 - 9644372
Alignment:
Q  87 caaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaa 186  Q
    |||||||||||| || || | ||||||| || || |||||||| |||||| | | ||||||||||| |||||| ||||| | ||||||||||||| | ||    
T  9644491 caaaaccctaccgatgccagcaaaggacgagatgtacctcccattcatgaaaggagcaagaactagtaggacacttagctaggaaccacttccaacccaa 9644392  T
Q  187 gagtttcactctgtccacca 206  Q
    ||||||| |||| |||||||    
T  9644391 gagtttcgctctatccacca 9644372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 25410579 - 25410663
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtcca 203  Q
    ||||||||||||||||   ||| ||| ||||||||| |  | ||||||| |||||||||||||||||||||||||||||| ||||    
T  25410579 tgcacctcccactcatagaaagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttcactctatcca 25410663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 51871264 - 51871201
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||||| || |||| || |||||||||||||||||||||||| | ||| ||||||||||    
T  51871264 gaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccaccactg 51871201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 4866876 - 4866794
Alignment:
Q  110 aggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagttt 192  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||||||||    
T  4866876 aggacaggttgcacctcccactcatgataagtgcaaggactagcaaggcacttagccaggaaccacttccaagctaagagttt 4866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 50655070 - 50655154
Alignment:
Q  108 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagttt 192  Q
    |||||||| |||||||||||||||||||  ||  |||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  50655070 aaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagccaggaaccacttccaagctaagagttt 50655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 23012347 - 23012435
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||| ||||||||||||||  ||||||||  ||| |||||||||||||| |||||| |||||||||||||||| ||||||||    
T  23012347 tgcacctcccattcatgataagtgcagaaactagcacaacacttagccatgaaccaattccaaactaagagtttcactctatccaccac 23012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 45068090 - 45068204
Alignment:
Q  78 ccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccactt 177  Q
    ||||||||||||||||||||  || ||   |||||||  |||||||||||| ||||||||||||| | |||||  |||| || ||||||| |||||||||    
T  45068090 ccaccaccacaaaaccctactgataccaacaaaggacgggttgcacctccccctcatgataagtgtaggaactgccagggcacttagccaggaaccactt 45068189  T
Q  178 ccaagctaagagttt 192  Q
    |||||||||||||||    
T  45068190 ccaagctaagagttt 45068204  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 19469776 - 19469667
Alignment:
Q  78 ccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccactt 177  Q
    |||||||||||||| |||||| || ||   |||||||| | | |||||||||||||||||||||||| ||||||||| |||| ||| | | |||||||||    
T  19469776 ccaccaccacaaaatcctaccgatgccaacaaaggacaggctacacctcccactcatgataagtgcaggaactagca-gacacttaactaggaaccactt 19469678  T
Q  178 ccaagctaaga 188  Q
    |||||||||||    
T  19469677 ccaagctaaga 19469667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 30251406 - 30251492
Alignment:
Q  121 cacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||||||  || |||||||||  |||| || ||||||| ||||||||| ||||| |||||||||||||| ||||||||    
T  30251406 cacctcccactcatgaacagagcaagaacttccagggcacttagccaggaaccactttcaagccaagagtttcactctatccaccac 30251492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 48309656 - 48309719
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    |||||||||||| | ||||||  |||| ||||||||||||||||||||||||| ||||||||||    
T  48309656 gaactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccactg 48309719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 24065104 - 24065194
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||| |||||||| |||| ||||   || |||||||||||  | |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  24065104 gttgtacctcccattcataataacaacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccac 24065194  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 44616665 - 44616746
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactct 198  Q
    ||||||||||||||||||  |||||||||||| ||||| | |  |||||||||| |||||| ||||||||||| ||| ||||    
T  44616665 gttgcacctcccactcatcgtaagtgcaagaattagcaaggcccttagccatgagccacttacaagctaagagcttctctct 44616746  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 43411602 - 43411515
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||| ||| ||||| ||||||||||||||| |||| |||||||    
T  43411602 tgcacctcccactcatgataagtgcaggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatccacca 43411515  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 41074569 - 41074656
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||| |||||||||| ||||| ||| ||||||||| || ||||||| ||||||||| ||||||||||||||| || ||||||||||    
T  41074569 tgcaccttccactcatgaaaagtg-aaggactagcagggcacttagccaggaaccactttcaagctaagagtttcgctttgtccaccac 41074656  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 10994493 - 10994430
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  10994493 gaactagcagggcacttagccaggaaccacttccaagctaagagtttaactctatccaccactg 10994430  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 52084 - 52009
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagttt 192  Q
    ||||||||||||||||||   ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  52084 gttgcacctcccactcatataaagtgcaagaactagcaagacacttagccaggaaccacttccaagctaagagttt 52009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 9557337 - 9557444
Alignment:
Q  81 ccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttcca 180  Q
    ||||||| ||||||||||||  || | |||||||  | |||||||||||||||||||||||||| || ||||||||||| |||| || ||| ||||||||    
T  9557337 ccaccaccaaaccctaccaaagccagcaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagtcaggaatcacttcca 9557436  T
Q  181 agctaaga 188  Q
    ||||||||    
T  9557437 agctaaga 9557444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 9755698 - 9755761
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||||| || ||||||   |||||||||||| |||||||||||||| ||||||||||||    
T  9755698 gaactagcagggcacttagcccgaaaccacttccaaactaagagtttcactttgtccaccactg 9755761  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 40188193 - 40188266
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagttt 192  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||    
T  40188193 tgcacctcctactcatgataagtgcaagaactagcagggcacttaggcaagaaccacttccaagctatgagttt 40188266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 23176908 - 23176996
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||| |||||||||||||||| ||||||||| |||| || || | ||||| |||||||||||||||||||||||| | ||||||    
T  23176908 tgcacctccaactcatgataagtgcatgaactagcatgacacttggcaaggaaccgcttccaagctaagagtttcactctatacaccac 23176996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 46028474 - 46028534
Alignment:
Q  147 aactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  46028474 aactagcaggacacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 46028534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 33743531 - 33743470
Alignment:
Q  148 actagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||| || ||||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  33743531 actagcagggcacttagccaagaaccactttcaagctaagattttaactctgtccaccactg 33743470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 12258463 - 12258376
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    ||||||||||||||||    || ||| | ||| |||||||| ||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  12258463 tgcacctcccactcatagagagagcagggactggcaggacacttagccaggaaccactttcaagctaagagtttaactctatccacca 12258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 26557857 - 26557918
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||||||| || ||||||| || ||||| ||||||||| ||||| ||||||||||||||    
T  26557857 gaactagcagggcacttagccaggagccactaccaagctaaaagtttaactctgtccaccac 26557918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 33888677 - 33888612
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactgac 211  Q
    ||||||||||| || ||||||   |||||||||||| ||||||||| |||||| ||||||||||||    
T  33888677 gaactagcagggcacttagcccgaaaccacttccaatctaagagttccactctatccaccactgac 33888612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 24604925 - 24604837
Alignment:
Q  119 tgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||||||||||||||||||||| | || |||||||||| || ||||||| ||||||||| ||| ||||||||||| |||| ||||||||    
T  24604925 tgcacctcccactcatgataagagaaaaaactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccaccac 24604837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 7656805 - 7656895
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||||||||| |||| |||||||||||||||| ||| |||||| ||||  | |||||||||||||  ||||||||||||||| ||||||||    
T  7656805 gttgcacctctcactaatgataagtgcaagaattagtaggacacttagttaggaaccacttccaaattaagagtttcactctatccaccac 7656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 42032832 - 42032733
Alignment:
Q  108 aaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||||||  |||||||||||||||||| | | | ||| ||| ||||||| || ||||||| ||||||||||||||||||||||||| |||| | ||||||    
T  42032832 aaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagccaggaaccacttccaagctaagagtttcgctctattcaccac 42032733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 32073896 - 32074017
Alignment:
Q  77 gccaccaccacaaaaccctaccaattcctgtaaaggacaagttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccact 176  Q
    |||||||||||||| |||||||  |||| ||| |||||  | ||| |||||||||||| | | | ||| ||||||| |||||| |||||||  || ||||    
T  32073896 gccaccaccacaaagccctaccggttccagtacaggacgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagccagaaatcact 32073995  T
Q  177 tccaagctaagagtttcactct 198  Q
    ||||| ||||||||||||||||    
T  32073996 tccaaactaagagtttcactct 32074017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 34152023 - 34152098
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagttt 192  Q
    |||||||||||||||||||| ||||||| |||||   ||| |  ||||||| ||||||||||||||||||||||||    
T  34152023 gttgcacctcccactcatgaaaagtgcaggaactgctagggcgcttagccaggaaccacttccaagctaagagttt 34152098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 36650463 - 36650526
Alignment:
Q  146 gaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccactg 209  Q
    ||||||||| |||| ||||||  |||||||| ||||||||||||||| ||||||||||||||||    
T  36650463 gaactagcaagacacttagcccggaaccactcccaagctaagagtttaactctgtccaccactg 36650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 42241233 - 42241322
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    ||||||||||||||||| | |||||||| ||||||| ||  |  || |||| ||||||||||||||||||||||||| || | |||||||    
T  42241233 gttgcacctcccactcaaggtaagtgcaggaactagtagagcgcttcgccaggaaccacttccaagctaagagtttcgctttatccacca 42241322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 41927066 - 41927020
Alignment:
Q  161 ttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||||||||    
T  41927066 ttagccaggaaccacttccaagctaagagattcgctctatccaccac 41927020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 18430 - 18520
Alignment:
Q  117 gttgcacctcccactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccaccac 207  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||  ||| ||||| ||| ||| ||||||| |||| ||||||||    
T  18430 gttgcacctcccactcatgataagtgcaggaactagcagggcacttagcccagaatcactttcaaactatgagtttcgctctatccaccac 18520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 83243 - 83311
Alignment:
Q  138 aagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagagtttcactctgtccacca 206  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||| | |||||||    
T  83243 aagtgcaagaactagcaggacacttcggcatgaaccacttccaagctaagagtttgactttatccacca 83311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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