View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1416_low_4 (Length: 277)
Name: NF1416_low_4
Description: NF1416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1416_low_4 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 27580 - 27832
Alignment:
| Q |
15 |
tcaattccaacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagat |
114 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27580 |
tcaattccaacagcttgaatcaacattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatggatgtgggaggtttagat |
27679 |
T |
|
| Q |
115 |
ttgttcctctttgttggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcatta |
214 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27680 |
ttgttcctctttgctggaattttctcactttcataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcatta |
27779 |
T |
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| Q |
215 |
aaactaatttcgtgttcttgctgttttcttttcatttatggttttcttttctt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27780 |
aaactaatttcgtgttcttgctgttttcttttcatttacggttttcttttctt |
27832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 16043573 - 16043823
Alignment:
| Q |
16 |
caattccaacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagatt |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16043573 |
caattccaacagcttgaatcaccattttgcaaa-catgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgagaggtttagatt |
16043671 |
T |
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| Q |
116 |
tgttcctctttgttggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcattaa |
215 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16043672 |
tgttcctctttgctgtaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcattaa |
16043771 |
T |
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| Q |
216 |
aactaatttcgtgttcttgctgttttcttttcatttatggttttcttttctt |
267 |
Q |
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|||||||||||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
16043772 |
aactaatttcgtgttcttgcagttttcttttcatttacgattttcttttctt |
16043823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 55500843 - 55500608
Alignment:
| Q |
15 |
tcaattccaacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagat |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55500843 |
tcaattcctacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgagaggtttagat |
55500744 |
T |
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| Q |
115 |
ttgttcctctttgttggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcatta |
214 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55500743 |
ttgttcttctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaattttgttttcccctttctaattttcatta |
55500644 |
T |
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| Q |
215 |
aaactaatttcgtgttcttgctgttttcttttcatt |
250 |
Q |
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| T |
55500643 |
aaactaatttcgtgttcttgcagttttcttttcatt |
55500608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 43079403 - 43079617
Alignment:
| Q |
29 |
ttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagatttgttcctctttgt |
128 |
Q |
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||||||||||||||||||||||| |||||| || | |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
43079403 |
ttgaatcaccattttgcaaaacaagaatatttg------tgattcactatttctagcatttcaacataagtgtgggaggtttagatttgttcccctttgc |
43079496 |
T |
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| Q |
129 |
tggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcattaaaactaatttcgtg |
228 |
Q |
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|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||| |||||| || |
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| T |
43079497 |
tgaaattttctcacttccataaatccagaatcacaaatttcatcttcctcacaacaattacg-tttccccattctaattttcattcaaattaattttatg |
43079595 |
T |
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| Q |
229 |
ttcttgctgttttcttttcatt |
250 |
Q |
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||||| || | ||||||||||| |
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| T |
43079596 |
ttcttactatattcttttcatt |
43079617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 40427188 - 40426936
Alignment:
| Q |
15 |
tcaattccaacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagat |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
40427188 |
tcaattccaagagcttgaatcaccattttgcaaaacatgaatatatgaatatcttatttaccgtttctagcatttcaacgtgggtgtgggaggtttagat |
40427089 |
T |
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| Q |
115 |
ttgttcctctttgttggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcatta |
214 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40427088 |
ttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacagcaatttcgttttcccctttctaattttcatta |
40426989 |
T |
|
| Q |
215 |
aaactaatttcgtgttcttgctgttttcttttcatttatggttttcttttctt |
267 |
Q |
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|| ||||||| ||||||||| |||||||||||||||| |||||||||||||| |
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| T |
40426988 |
caagtaatttcttgttcttgcagttttcttttcatttacggttttcttttctt |
40426936 |
T |
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