View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1416_low_9 (Length: 214)
Name: NF1416_low_9
Description: NF1416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1416_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 4194499 - 4194681
Alignment:
| Q |
19 |
atcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgt |
116 |
Q |
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| T |
4194499 |
atcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaaccttcgctatgtcaacgt |
4194598 |
T |
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| Q |
117 |
tgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtcca |
199 |
Q |
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| T |
4194599 |
tgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtcca |
4194681 |
T |
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Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 50772725 - 50772552
Alignment:
| Q |
26 |
aaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggg |
123 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| | |||||| ||||||||||||| |
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| T |
50772725 |
aaatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatacgctggagcaaccctggcaatgtcaacgttgttggg |
50772626 |
T |
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| Q |
124 |
agtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagca-agggggcaaacaacttgaagt |
196 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
50772625 |
agtgacctaatgtgaaagtacagaagaaacaagttagaatttattctcagtagggggggcaaacaactggaagt |
50772552 |
T |
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