View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14170_high_4 (Length: 358)
Name: NF14170_high_4
Description: NF14170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14170_high_4 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 27762576 - 27762231
Alignment:
| Q |
1 |
aaaacagggcaagatgactacagttgtgtaaataatgtggataaggtagaacgaaaatcactcccatatcaaacgggttgaggagtttagtcttgtttga |
100 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27762576 |
aaaacagggtaacatgactacagttgtgtaaataatgtggataaggtacaacgaaaatcactcccataccaaacgggttgaggagtttagtcttgtttga |
27762477 |
T |
|
| Q |
101 |
ggttgaacaacatgtttgtattcggcctccatgtatattttgtgcatgctaagtcattcattaatcaattaagttaagtaaaatcgtgacataaaacgag |
200 |
Q |
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| T |
27762476 |
ggttgaacaacatatttgtattcggcctccatgtatattttgtgcatgctaagtcattcattaatcaattaagttaagtaaaattgtgacataaaacgag |
27762377 |
T |
|
| Q |
201 |
tcctattannnnnnngttgctataaatttgactttagggagtcatttggtcttaggattactgtgtgtcattgaaaccannnnnnnaaattcgttgcatt |
300 |
Q |
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| T |
27762376 |
tcctattatttttttgttgctataaatttgactttagggagtcatttggtcttaggattactgtgtgtcattgaaaccatttttttaaattcgttgcatt |
27762277 |
T |
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| Q |
301 |
ggatctacaagaatgccaagaatatcttagcaacaagtttcatatt |
346 |
Q |
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| T |
27762276 |
ggatctacaagaatgccaagaatatcttagcaacaagtttcctatt |
27762231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 14705282 - 14705233
Alignment:
| Q |
85 |
gtttagtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
14705282 |
gtttagtcttctttgaggttgaacaactggtttgtattcagcctccatgt |
14705233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 16382675 - 16382724
Alignment:
| Q |
85 |
gtttagtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
16382675 |
gtttagtcttctttgaggttgaaaagcaggtttgtattccgcctccatgt |
16382724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 56470 - 56406
Alignment:
| Q |
85 |
gtttagtcttgtttgaggttgaacaacatgtttgtattcggcctccatgtatattttgtgcatgc |
149 |
Q |
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| T |
56470 |
gtttagtcttcgttgaggttgaacaacaggtttgtattcagcctccatgtgaattttatgcatgc |
56406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 24438379 - 24438334
Alignment:
| Q |
89 |
agtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
24438379 |
agtcttctttgaggttgaacaactggtttgtattcagcctccatgt |
24438334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 22942952 - 22942907
Alignment:
| Q |
89 |
agtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
22942952 |
agtcttatttgaggttgaacaactggtttgtattcagcctccatgt |
22942907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 23865396 - 23865351
Alignment:
| Q |
89 |
agtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
23865396 |
agtcttatttgaggttgaacaactggtttgtattcagcctccatgt |
23865351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 5893733 - 5893778
Alignment:
| Q |
89 |
agtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
5893733 |
agtcttctttgaggttgaacaactggtttgtattcagcctccatgt |
5893778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 18502361 - 18502406
Alignment:
| Q |
89 |
agtcttgtttgaggttgaacaacatgtttgtattcggcctccatgt |
134 |
Q |
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| T |
18502361 |
agtcttctttgaggttgaacaactggtttgtattcagcctccatgt |
18502406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 3287169 - 3287233
Alignment:
| Q |
85 |
gtttagtcttgtttgaggttgaacaacatgtttgtattcggcctccatgtatattttgtgcatgc |
149 |
Q |
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| T |
3287169 |
gtttagccttctttgtggttgaacgacaagtttgtattcaacctccaagtgtattttgtgcatgc |
3287233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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