View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14170_high_6 (Length: 329)
Name: NF14170_high_6
Description: NF14170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14170_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 22195570 - 22195273
Alignment:
| Q |
30 |
ccatcaacccgtggaacatcccctgaatcgataacaaaatatgtatccttagatataaactgtatccttagccacgagcaaaaatattttaggaacaata |
129 |
Q |
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| T |
22195570 |
ccatcaacccgtggaacatcccctgaatcgataacaaaatatgtatccttagatataaactgtatccttagccacgagcaaa--tattttgggaacaata |
22195473 |
T |
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| Q |
130 |
tcaaactatgaagcactgccatcgataaagaaacaggatacaaccatgacagtgacaagtagacactgaaaataatttgagaagatggaagtgattaaat |
229 |
Q |
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| T |
22195472 |
tcaaactatgaagcaatgccatcgataaagacacaggacacaaccataatagtgacaagtagacgctgaaaataatttgagaagatggaagtgattaaat |
22195373 |
T |
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| Q |
230 |
gtctctacaccgaaggtgtggacacgggacacaccttaaatatcacgtattgatgctatatatcaaccagatagtgaataacatatagaatcacactaga |
329 |
Q |
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| T |
22195372 |
gtctctacaccgaaggtgtggacatgggacacaccttaaatatcacgtattgatgctatatatcaaccagatagtgaataacatatagaatcacactaga |
22195273 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 31864426 - 31864388
Alignment:
| Q |
192 |
acactgaaaataatttgagaagatggaagtgattaaatg |
230 |
Q |
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| T |
31864426 |
acactgaaaataatttgagaaaatggatgtgattaaatg |
31864388 |
T |
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