View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14170_high_7 (Length: 326)

Name: NF14170_high_7
Description: NF14170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14170_high_7
NF14170_high_7
[»] chr8 (15 HSPs)
chr8 (22-168)||(38613611-38613757)
chr8 (165-295)||(6311097-6311229)
chr8 (167-295)||(7290080-7290211)
chr8 (168-293)||(36979184-36979308)
chr8 (168-293)||(4760242-4760366)
chr8 (168-293)||(30655448-30655572)
chr8 (168-274)||(18853356-18853457)
chr8 (168-287)||(18870734-18870849)
chr8 (159-293)||(10689309-10689442)
chr8 (189-295)||(39784977-39785086)
chr8 (189-272)||(25328456-25328540)
chr8 (204-293)||(33037972-33038063)
chr8 (189-272)||(35745213-35745298)
chr8 (189-263)||(10684452-10684528)
chr8 (166-242)||(19752609-19752683)
[»] chr5 (22 HSPs)
chr5 (167-295)||(1457315-1457446)
chr5 (168-295)||(27444771-27444901)
chr5 (168-295)||(43592080-43592210)
chr5 (168-295)||(43598525-43598655)
chr5 (168-295)||(43604017-43604147)
chr5 (168-295)||(43609509-43609639)
chr5 (168-295)||(27449615-27449745)
chr5 (185-295)||(30631227-30631338)
chr5 (189-295)||(28807729-28807837)
chr5 (189-295)||(15044512-15044618)
chr5 (189-272)||(37556802-37556887)
chr5 (189-272)||(37561624-37561709)
chr5 (168-233)||(31180079-31180142)
chr5 (189-272)||(2785197-2785282)
chr5 (189-272)||(31397171-31397256)
chr5 (189-272)||(31402028-31402113)
chr5 (168-293)||(38191983-38192105)
chr5 (168-293)||(38219208-38219330)
chr5 (207-272)||(33791158-33791223)
chr5 (207-272)||(33768021-33768086)
chr5 (168-293)||(24135659-24135781)
chr5 (168-224)||(35387474-35387527)
[»] chr4 (12 HSPs)
chr4 (167-295)||(51520257-51520388)
chr4 (189-295)||(9224560-9224668)
chr4 (189-295)||(9229347-9229455)
chr4 (167-295)||(56146865-56146996)
chr4 (189-294)||(3813846-3813954)
chr4 (168-293)||(24741748-24741871)
chr4 (189-295)||(18855549-18855657)
chr4 (189-293)||(45347973-45348079)
chr4 (189-293)||(45357452-45357558)
chr4 (168-293)||(29760449-29760572)
chr4 (189-295)||(5732486-5732593)
chr4 (221-251)||(3813734-3813764)
[»] scaffold0135 (1 HSPs)
scaffold0135 (189-295)||(35215-35323)
[»] chr7 (17 HSPs)
chr7 (189-295)||(12396735-12396843)
chr7 (189-295)||(12406155-12406263)
chr7 (189-272)||(24024506-24024589)
chr7 (189-295)||(4866553-4866661)
chr7 (166-272)||(2057763-2057866)
chr7 (189-295)||(31109737-31109844)
chr7 (168-293)||(20357713-20357837)
chr7 (189-295)||(21812393-21812501)
chr7 (189-295)||(19992135-19992243)
chr7 (168-293)||(1533608-1533730)
chr7 (168-293)||(21645818-21645940)
chr7 (189-263)||(16879894-16879970)
chr7 (189-263)||(16884750-16884826)
chr7 (189-263)||(24261511-24261587)
chr7 (189-263)||(24266390-24266466)
chr7 (168-243)||(2479148-2479221)
chr7 (164-243)||(47263485-47263562)
[»] chr6 (15 HSPs)
chr6 (189-295)||(11856795-11856903)
chr6 (189-295)||(14737730-14737838)
chr6 (189-295)||(14742589-14742697)
chr6 (189-295)||(22010850-22010958)
chr6 (189-295)||(6438324-6438431)
chr6 (189-295)||(28184325-28184436)
chr6 (189-272)||(28155749-28155832)
chr6 (168-293)||(5674934-5675057)
chr6 (168-293)||(30125960-30126084)
chr6 (189-272)||(6005239-6005324)
chr6 (207-272)||(5343322-5343387)
chr6 (207-272)||(33330625-33330690)
chr6 (189-272)||(33336122-33336207)
chr6 (189-272)||(16838566-16838651)
chr6 (168-243)||(31936398-31936470)
[»] chr3 (17 HSPs)
chr3 (189-295)||(22173348-22173456)
chr3 (166-293)||(7167049-7167174)
chr3 (189-295)||(18656256-18656363)
chr3 (168-293)||(2671752-2671876)
chr3 (189-272)||(8512037-8512122)
chr3 (189-272)||(8516917-8517002)
chr3 (168-271)||(40372986-40373085)
chr3 (167-293)||(8477170-8477295)
chr3 (168-272)||(8739254-8739354)
chr3 (168-272)||(9091492-9091592)
chr3 (189-272)||(2677266-2677351)
chr3 (168-295)||(28504020-28504145)
chr3 (189-272)||(2673110-2673195)
chr3 (189-272)||(10207755-10207840)
chr3 (189-254)||(32475306-32475373)
chr3 (215-272)||(24967957-24968014)
chr3 (189-254)||(32480163-32480231)
[»] chr2 (10 HSPs)
chr2 (189-295)||(44312777-44312885)
chr2 (166-293)||(11099093-11099219)
chr2 (189-295)||(32246607-32246716)
chr2 (189-295)||(39812141-39812250)
chr2 (168-293)||(14291295-14291419)
chr2 (189-272)||(19344243-19344327)
chr2 (189-272)||(19349101-19349185)
chr2 (168-293)||(9296567-9296691)
chr2 (168-293)||(25403443-25403565)
chr2 (168-293)||(25398305-25398427)
[»] scaffold0355 (2 HSPs)
scaffold0355 (189-272)||(9818-9902)
scaffold0355 (189-295)||(40-143)
[»] chr1 (10 HSPs)
chr1 (189-295)||(25445244-25445352)
chr1 (189-295)||(39445322-39445430)
chr1 (189-295)||(44024027-44024135)
chr1 (189-267)||(41386571-41386650)
chr1 (189-272)||(41398060-41398144)
chr1 (189-295)||(1055166-1055274)
chr1 (207-272)||(43988644-43988709)
chr1 (204-265)||(24787564-24787624)
chr1 (168-293)||(24202932-24203054)
chr1 (168-224)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (189-295)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (189-267)||(34132-34211)
[»] scaffold0978 (1 HSPs)
scaffold0978 (167-291)||(404-528)
[»] scaffold0197 (2 HSPs)
scaffold0197 (189-272)||(19343-19428)
scaffold0197 (189-263)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (189-272)||(149134-149219)
[»] scaffold0479 (1 HSPs)
scaffold0479 (189-246)||(13171-13229)
[»] scaffold0259 (1 HSPs)
scaffold0259 (189-272)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (168-293)||(24208-24331)
[»] scaffold0009 (1 HSPs)
scaffold0009 (189-263)||(182152-182228)
[»] scaffold0087 (1 HSPs)
scaffold0087 (168-243)||(44174-44247)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  22 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgtcttcacctgcagggtcttaaatacat 121  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  122 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 168  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 6311097 - 6311229
Alignment:
Q  165 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca 264  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  265 aacaaca--aaaccagccctagactagtgtata 295  Q
    |||||||  ||| ||||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgtata 6311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 7290211 - 7290080
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  266 acaaca--aaaccagccctagactagtgtata 295  Q
    ||||||  ||| ||||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgtata 7290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||| ||||||||  ||||| |||||||||||| || |||||||||||||||||||   ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaaa--aacaaagatgtgtggagctagagatagtggtaatcaatgag-caaaatggtttccaagcaaca 4760270  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  266 acaac-aaaaccagccctagactagtgta 293  Q
    ||||| |||| ||||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  268 aacaaaa 274  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  268 aacaaaaccagccctagact 287  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 10689442 - 10689309
Alignment:
Q  159 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttc 258  Q
    ||||| || ||||||| || ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  259 caagca--aacaacaaaaccagccctagactagtgta 293  Q
    ||||||  |||||||||| || ||||||  |||||||    
T  10689345 caagcaacaacaacaaaaacaaccctagtgtagtgta 10689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 39785086 - 39784977
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||| ||||||| || ||||  ||| ||||||||      
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaacaaaacagccctaag 39784987  T
Q  286 ctagtgtata 295  Q
    ||||||||||    
T  39784986 ctagtgtata 39784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--aacaacaa-aaccagccctagactagtgta 293  Q
    |||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |||||||| || ||||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 10684528 - 10684452
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 10684452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19752683 - 19752609
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaat 242  Q
    |||||||||| ||||||  ||| |||||||||||||| |||||| ||||||||||||||  |  |||||||||||||    
T  19752683 tctgttgtgaatccggtaaaaa-tcacaccaatgaaa-aaacaaagatgtgtggagcaaaaggaagtggtaatcaat 19752609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 1457446 - 1457315
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  266 acaaca--aaaccagccctagactagtgtata 295  Q
    ||||||  ||| ||||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgtata 1457315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 27444771 - 27444901
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  | | ||||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgtata 27444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 43592080 - 43592210
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  ||| ||||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgtata 43592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 43598525 - 43598655
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  ||| ||||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgtata 43598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 43604017 - 43604147
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  ||| ||||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgtata 43604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 43609509 - 43609639
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  ||| ||||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgtata 43609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 27449615 - 27449745
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaa 266  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  267 caaca--aaaccagccctagactagtgtata 295  Q
    |||||  | | ||||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgtata 27449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 30631227 - 30631338
Alignment:
Q  185 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--aacaacaaaaccagccct 282  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||  |||||||||| |||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaa-cagccct 30631325  T
Q  283 agactagtgtata 295  Q
    |||||||||||||    
T  30631326 agactagtgtata 30631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 28807837 - 28807729
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||  |    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 28807738  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  28807737 tagtgtata 28807729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 15044512 - 15044618
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||| |||||||| ||||| | |||||||  ||| |||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  15044610 tagtgtata 15044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 233  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  | | |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctat--gtgtaaagtgtctccaagcaaca 38192077  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  | | |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctat--gtgtaaagtgtctccaagcaaca 38219302  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 33791158 - 33791223
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33791223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 33768021 - 33768086
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| ||||| |||||||   ||||||| ||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaa 33768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 24135659 - 24135781
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| ||||| | ||||||||||||||||||   | || ||||||||||||||  |  |||||||||| |||||   |||  || |||||||||||    
T  24135659 tgttgtgaatccggataaaactcacaccaatgaaa---ataaagatgtgtggagcaaaagggagtggtaatctatgagt--aaagagtctccaagcaaac 24135753  T
Q  268 aacaa--aaccagccctagactagtgta 293  Q
    |||||  || ||||||||||||||||||    
T  24135754 aacaacaaaacagccctagactagtgta 24135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 51520257 - 51520388
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  266 acaaca--aaaccagccctagactagtgtata 295  Q
    ||||||  ||| ||||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgtata 51520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 9224668 - 9224560
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  9224568 tagtgtata 9224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 9229455 - 9229347
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  9229355 tagtgtata 9229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 56146996 - 56146865
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  266 acaaca--aaaccagccctagactagtgtata 295  Q
    ||||||  ||| ||||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgtata 56146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 3813846 - 3813954
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| ||| ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  286 ctagtgtat 294  Q
    |||||||||    
T  3813946 ctagtgtat 3813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 18855549 - 18855657
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||  |    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 18855648  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  18855649 tagtgtata 18855657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 45348079 - 45347973
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| |||||||  ||| ||| |||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45347980  T
Q  287 tagtgta 293  Q
    |||||||    
T  45347979 tagtgta 45347973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 45357558 - 45357452
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| |||||||  ||| ||| |||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45357459  T
Q  287 tagtgta 293  Q
    |||||||    
T  45357458 tagtgta 45357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||| | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| || |||||||||||||||    
T  29760546 acaacaaaa-caaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 5732486 - 5732593
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||  ||| ||||||||  |    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 5732584  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  5732585 tagtgtata 5732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 3813734 - 3813764
Alignment:
Q  221 gcaagtgatagtggtaatcaatgagagcaaa 251  Q
    |||||||||||||||||||||||||||||||    
T  3813734 gcaagtgatagtggtaatcaatgagagcaaa 3813764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 35323 - 35215
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  35223 tagtgtata 35215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 12396735 - 12396843
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  12396835 tagtgtata 12396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 12406155 - 12406263
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  12406255 tagtgtata 12406263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 4866553 - 4866661
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||  ||| ||| |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  4866653 tagtgtata 4866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  266 acaacaa 272  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 31109844 - 31109737
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||| |||||||  ||| |||||||| ||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta-ac 31109746  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  31109745 tagtgtata 31109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc---a 264  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 21812501 - 21812393
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||  |    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaacaaacagccctaagc 21812402  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  21812401 tagtgtata 21812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 19992135 - 19992243
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||  ||||||| || ||||||||  |    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaacaaacagccctaagc 19992234  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  19992235 tagtgtata 19992243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||   |||||||||||||||||||  |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaaaatatagtggtaatcaatgaga--aaaaagtttccaagcaaca 1533636  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    |||||||||||||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 21645818 - 21645940
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  ||| |||  || ||||||||  |    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaagggagtggtaatctat--gagtaaagtgtctccaagcaaca 21645912  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||| ||||||||    
T  21645913 acaacaaaaacagccctagtctagtgta 21645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 16879894 - 16879970
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16879970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 16884750 - 16884826
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16884826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 24261587 - 24261511
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 24266466 - 24266390
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 2479148 - 2479221
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  2479148 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 2479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 47263485 - 47263562
Alignment:
Q  164 cttctgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||||||| |||||||||| | |||||||||||||  |||||| |||| |||||||||  || ||||||||||||||    
T  47263485 cttctgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgcgtggagcaaagga-agtggtaatcaatg 47263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 11856795 - 11856903
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  11856895 tagtgtata 11856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 14737838 - 14737730
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  14737738 tagtgtata 14737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 14742697 - 14742589
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||  ||| |||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagccctagac 14742598  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  14742597 tagtgtata 14742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 22010958 - 22010850
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| | |||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 22010859  T
Q  287 tagtgtata 295  Q
     ||||||||    
T  22010858 aagtgtata 22010850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 6438324 - 6438431
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagact 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||  ||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaacaaacagccctaagct 6438423  T
Q  288 agtgtata 295  Q
    ||||||||    
T  6438424 agtgtata 6438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 28184325 - 28184436
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagc--aaatggtttccaagcaaacaaca--aaaccagcccta 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |  ||||||| |||||||||||||||  ||| ||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  284 gactagtgtata 295  Q
    ||||||||||||    
T  28184425 gactagtgtata 28184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggttt-ccaagca-- 264  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |||||||||||||||  |||| |||  |||| |||||||      
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaa--agagtaaaaagtttcccaagcaac 5674963  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||||||||||||| ||||||||    
T  5674962 aacaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa-- 265  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  266 -acaacaaaaccagccctagactagtgta 293  Q
     ||||||||| ||||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 5343322 - 5343387
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 5343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 33330690 - 33330625
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33330625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 33336207 - 33336122
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||| | ||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaa 33336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 16838566 - 16838651
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| | ||||| ||||| ||||||||  | ||||| ||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaa 16838651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 31936398 - 31936470
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| ||||||| ||| ||||||||||||||  ||||| ||||||||||||||  |  ||||||||||||||    
T  31936398 tgttgtgaatccggttaaaa-tcacaccaatgaaa--aacaaagatgtgtggagcaaaaggaagtggtaatcaatg 31936470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 22173456 - 22173348
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  22173356 tagtgtata 22173348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca- 264  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||   ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-caaaatggtttccaagcaa 7167145  T
Q  265 -aacaacaaaaccagccctagactagtgta 293  Q
     |||||||||| ||||||||||||||||||    
T  7167146 caacaacaaaa-cagccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 18656256 - 18656363
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||  ||| ||||||||  |    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 18656354  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  18656355 tagtgtata 18656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 2671876 - 2671752
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||  |||||||| ||||||||       
T  2671876 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||| ||||||||    
T  2671780 aacaacaaaaacagccctagtctagtgta 2671752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| |   |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatg-ggcaaaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  167 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggttt-ccaagca 264  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  |||||||||||||||  |||| |||  |||| |||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaa--agagtaaaaagtttcccaagca 8477264  T
Q  265 --aacaacaaaaccagccctagactagtgta 293  Q
      |||||||||||||||||||||||||||||    
T  8477265 acaacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  268 aacaa 272  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  268 aacaa 272  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 28504145 - 28504020
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||| ||||| ||||||  ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgaga-aaaatggtttccaagcaaca 28504049  T
Q  266 acaacaaaaccagccctagactagtgtata 295  Q
    ||||||||| ||||||| ||||||||||||    
T  28504048 acaacaaaa-cagcccttgactagtgtata 28504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||| ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 32475306 - 32475373
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatgg 254  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  32475306 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatgg 32475373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 24967957 - 24968014
Alignment:
Q  215 tgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  24967957 tgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 24968014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 32480163 - 32480231
Alignment:
Q  189 tcacaccaatga-aataaa--caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatgg 254  Q
    |||||||||||| ||||||  ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  32480163 tcacaccaatgagaataaatccaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatgg 32480231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 44312885 - 44312777
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctagac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| | |||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 44312786  T
Q  287 tagtgtata 295  Q
     ||||||||    
T  44312785 aagtgtata 44312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca- 264  Q
    |||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  265 -aacaacaaaaccagccctagactagtgta 293  Q
     |||||||||| ||||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 32246607 - 32246716
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||  ||| ||| ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  286 ctagtgtata 295  Q
    ||||||||||    
T  32246707 ctagtgtata 32246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 39812250 - 39812141
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||  ||| ||||||||      
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagccctaag 39812151  T
Q  286 ctagtgtata 295  Q
    ||||||||||    
T  39812150 ctagtgtata 39812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 14291295 - 14291419
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| |   ||||||||||||||||       
T  14291295 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatg-ggcaaaatggtttccaagcaaac 14291390  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||||||| ||||    
T  14291391 aacaacaaaaacagccctagactaatgta 14291419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 9296691 - 9296567
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--- 264  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||||||||| |||||   ||||||||||||||||       
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgag-caaaatggtttccaagcaaac 9296596  T
Q  265 aacaacaaaaccagccctagactagtgta 293  Q
    |||||||||| ||||||||| ||||||||    
T  9296595 aacaacaaaaacagccctagtctagtgta 9296567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  | | |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctat--gtgtaaagtgtctccaagcaaca 25403537  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  | | |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctat--gtgtaaagtgtctccaagcaaca 25398399  T
Q  266 acaacaaaaccagccctagactagtgta 293  Q
    ||||||||| ||||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 143 - 40
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaaca--aaaccagccctaga 285  Q
    |||||||||| |||||||| |||||||||||||||||||||||      ||||||||||||||||||| |||||| ||||||||  ||| ||||||||      
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtgata------atcaatgagagcaaatggtctccaagtaaacaacaacaaaacagccctaag 50  T
Q  286 ctagtgtata 295  Q
    ||||||||||    
T  49 ctagtgtata 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 25445352 - 25445244
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||  |    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 25445253  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  25445252 tagtgtata 25445244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 39445322 - 39445430
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||| || ||||||||  |    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaacaaacagccctaagc 39445421  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  39445422 tagtgtata 39445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 44024135 - 44024027
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||  |    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 44024036  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  44024035 tagtgtata 44024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 1055274 - 1055166
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || ||||||  ||||||||  ||||||| || ||||||||  |    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaacaaacagccctaagc 1055175  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  1055174 tagtgtata 1055166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  207 caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaa 265  Q
    |||||| ||||||||||||||| |||||||||||| ||||||   |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgag-caaaatggtttccaagcaa 24787564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 24203054 - 24202932
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |  |||||||||| ||  | | |||  || |||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagggagtggtaatctat--gtgtaaagtgtctccaagcaaac 24202960  T
Q  268 aaca--aaaccagccctagactagtgta 293  Q
    ||||  ||| |||||||| |||||||||    
T  24202959 aacaacaaaacagccctaaactagtgta 24202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 185 - 293
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa-aaccagccctagac 286  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||  |    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 284  T
Q  287 tagtgtata 295  Q
    |||||||||    
T  285 tagtgtata 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaac 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 528 - 404
Alignment:
Q  167 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca-- 264  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||   ||||||||||||||||      
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaac 432  T
Q  265 aacaac-aaaaccagccctagactagtg 291  Q
    |||||| |||| |||||||| |||||||    
T  431 aacaacaaaaaacagccctaaactagtg 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 14573 - 14497
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 14497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 13171 - 13229
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgaga 246  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgaga 13229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 2514 - 2429
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagcaaacaacaa 272  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  | ||||| ||||| ||||||||  ||||||| ||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaa 2429  T

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Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 24331 - 24208
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagca--a 265  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||  | | |||  || ||||||||  |    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctat--gtgtaaagtgtctccaagcaaca 24237  T
Q  266 acaac-aaaaccagccctagactagtgta 293  Q
    ||||| |||||||||||||||||||||||    
T  24236 acaacaaaaaccagccctagactagtgta 24208  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 182228 - 182152
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtttccaagc 263  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||||| ||||||||  |||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 182152  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 44247 - 44174
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 243  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  44247 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 44174  T

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