View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14171_high_7 (Length: 238)

Name: NF14171_high_7
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14171_high_7
NF14171_high_7
[»] chr4 (8 HSPs)
chr4 (15-222)||(7009880-7010087)
chr4 (30-222)||(6992093-6992287)
chr4 (15-222)||(7044170-7044377)
chr4 (48-222)||(7036504-7036678)
chr4 (48-222)||(7000893-7001067)
chr4 (48-206)||(7025194-7025352)
chr4 (48-222)||(7017917-7018092)
chr4 (48-202)||(7051182-7051336)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 7010087 - 7009880
Alignment:
Q  15 atgaaataaaaaatagaatgattaagattactgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccata 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7010087 atgaaataaaaaatggaatgattaagattactgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccata 7009988  T
Q  115 agcttcaatatgagttaacatattcaaactaaaaagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatg 214  Q
    |||||||| | |||||||||||| |||||||| |||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7009987 agcttcaagaggagttaacatatgcaaactaagaagtacaagagaaagtagaatctgacaaaaatagtgaagtgaattatgagaaggaggaaccatcatg 7009888  T
Q  215 ttcatctt 222  Q
    ||||||||    
T  7009887 ttcatctt 7009880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 6992287 - 6992093
Alignment:
Q  30 gaatgattaagattactg--acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatga 127  Q
    |||||||||||||| ||   ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992287 gaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatga 6992188  T
Q  128 gttaacatattcaaactaaaaagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 222  Q
    ||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6992187 gttaacatattcaaagtaaaaagtccaaatgcaagtagaatctgacaagaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 6992093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 7044377 - 7044170
Alignment:
Q  15 atgaaataaaaaatagaatgattaagattactgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccata 114  Q
    ||||||||||| || |||||||||| ||| ||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| | |    
T  7044377 atgaaataaaatatggaatgattaaaattgctgaccctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttcaacctttgagcgaga 7044278  T
Q  115 agcttcaatatgagttaacatattcaaactaaaaagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatg 214  Q
    |||||||| | |||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||    
T  7044277 agcttcaagaggagttaacatctgcaaactaaaaagtccaagagcaagtagaatctgacaagaatagtgaagtgaattacgagatggaggagccatcatg 7044178  T
Q  215 ttcatctt 222  Q
    ||||||||    
T  7044177 ttcatctt 7044170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 7036678 - 7036504
Alignment:
Q  48 acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaa 147  Q
    |||| |||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||     
T  7036678 accctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaacatatgcaaactaag 7036579  T
Q  148 aagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 222  Q
    |||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7036578 aagtacaagagaaagtagaatctgacaaaaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 7036504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 7001067 - 7000893
Alignment:
Q  48 acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaa 147  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||     
T  7001067 accctgtttcaagttcaaaaggaagtggaccttgaaaaccaggaagctgttcaacctttgagccataagcttcaagaggagttaacatatgcaaactaag 7000968  T
Q  148 aagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 222  Q
    |||| ||||||  ||||||||||||||| |||||||  ||||||||||||||||||||| || | ||||||||||    
T  7000967 aagtacaagagaaagtagaatctgacaagaatagtgtggtgaattatgagaaggaggaatcaacttgttcatctt 7000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 7025352 - 7025194
Alignment:
Q  48 acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaa 147  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  7025352 accccgtttcaagttcaaaagggagtggcccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaagaggagttaacatatgcaaactaaa 7025253  T
Q  148 aagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaa 206  Q
    |||| ||| ||| |||| || ||||||||||||||  |||||| |||||||||||||||    
T  7025252 aagtgcaaaagcaagtacaaactgacaacaatagtatagtgaactatgagaaggaggaa 7025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 7018092 - 7017917
Alignment:
Q  48 acccagtttcaagttcaaaaggaagtggcccttgaaaa-ccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaa 146  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||| || | |||  |||    
T  7018092 accccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttcaacctttgagccataagcttcaatgtgagataatatctgcaagataa 7017993  T
Q  147 aaagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaaggaggaaccatcatgttcatctt 222  Q
    ||||| ||| ||| |||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  7017992 aaagtgcaaaagcaagtacaatttgacaacaatagtgaagtaaattatgagaaggaggagccatcatgtacatctt 7017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 7051336 - 7051182
Alignment:
Q  48 acccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaatatgagttaacatattcaaactaaa 147  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| ||||||||  |||||||| ||||||||| | |||||||||||| |||||||||    
T  7051336 accccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccagaagcttcaagaggagttaacatatgcaaactaaa 7051237  T
Q  148 aagtccaagagctagtagaatctgacaacaatagtgaagtgaattatgagaagga 202  Q
    |||| ||| ||  |||| || ||||||||||||||  |||||| |||||| ||||    
T  7051236 aagtgcaaaagtaagtacaaactgacaacaatagtatagtgaactatgaggagga 7051182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University