View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_1 (Length: 626)
Name: NF14171_low_1
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_1 |
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| [»] scaffold0308 (3 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 36 - 619
Target Start/End: Original strand, 12001821 - 12002401
Alignment:
| Q |
36 |
tctttttatcagtttttggaactgccttgttgcaaactgaaaggaagaaggtttgacagattttatggttttctgcaatatgaacaatctggctgactag |
135 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
12001821 |
tctttgtatcagtttttggaactgccttgctgcaaactgaaaggaagaaggtttgacagattttatggtttccagcaatatgaacaatctggctgactag |
12001920 |
T |
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| Q |
136 |
aaattagatgcaatttgcccaaaacaaatattcagttggggtaaataattgaaaaagcaaatgtcaggacatgtaagtggataacaattaaggttccagg |
235 |
Q |
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| T |
12001921 |
aaactagatgcaatttgcccaaaacaaatattcagttggggtaaataattgaaaaagccaatgtcaggacatgtaagtggataacaattaaggttccagg |
12002020 |
T |
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| Q |
236 |
tttgtcatgttccttctttatcaccctggctctgaataccgcaaggttcatgatatttcactctaattaaaggtcatttctaaaagctaacaggggaagt |
335 |
Q |
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| T |
12002021 |
tttgtcatgttccttctttatcaccctggctctgaataccgcaaggtccatgatatttcactctaattaaaggtcatttctaaaaactaacaggggaggt |
12002120 |
T |
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| Q |
336 |
aactcccgacacatggaccaacttgtttccgaaagacatttggaatgagattataagctagcatgttttgatatttctgcttattgtttctggttgtgtt |
435 |
Q |
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| T |
12002121 |
aactcccgacacatggatcaacttgtttccgaaggacatttggaatgagattataagctagcatgttttgatatttctgcttattgtttctggttgtgtt |
12002220 |
T |
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| Q |
436 |
ataattcgctgataccttatctttcttggagtattatttgtgatatttttggctgtcttgaagtatattagggtgtgtggtaatccatagcatattgggt |
535 |
Q |
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| T |
12002221 |
ataactcgctgataccttatctttcttggag---tatttgtgatatttttggctgtcttgaagtatattagggtgtgtggtaatccatagcatattgggt |
12002317 |
T |
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| Q |
536 |
ttgtatggcttgcggatgaagaaagtagacgatattgatgcttactgtttcttgcttactgacatagtttaaactttgatgatg |
619 |
Q |
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| T |
12002318 |
ttgtatggcttgcggatgaagaaagtagacgatattgatgcttactgtttctttcttactgacatagtttaaactttgatgatg |
12002401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 468
Target Start/End: Original strand, 10081 - 10254
Alignment:
| Q |
290 |
atttcactctaattaaaggtcatttctaaaagctaacaggggaagtaactcccgacacatggaccaacttgtttccgaaagacatttggaatgagattat |
389 |
Q |
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| T |
10081 |
atttcaatctaattagaggtcaattctaaaaattaatagggcaggtaacttgcgacacatggaccaacttgttttcaaaagacattttga-----aatat |
10175 |
T |
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| Q |
390 |
aagctagcatgttttgatatttctgcttattgtttctggttgtgttataattcgctgataccttatctttcttggagta |
468 |
Q |
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| T |
10176 |
aagctagcatgatttggtgtttctttttattattgctggttgtgctataactggttgatagcttatctgtcttggagta |
10254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 710 - 791
Alignment:
| Q |
162 |
aatattcagttggggtaaataattgaaaaagcaaatgtcaggacatgtaagtggataacaattaaggttccaggtttgtcat |
243 |
Q |
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| T |
710 |
aatattcagttggagtaagtaattgaagaagccaaactcagaacttgaaagtggataacagttaaggttctaagtttgtcat |
791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 620 - 657
Alignment:
| Q |
69 |
aaactgaaaggaagaaggtttgacagattttatggttt |
106 |
Q |
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| T |
620 |
aaactgaaagtaagaaggtttgacagattttatagttt |
657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 42219 - 42156
Alignment:
| Q |
44 |
tcagtttttggaactgccttgttgcaa-actgaaaggaagaaggtttgacagattttatggttt |
106 |
Q |
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| T |
42219 |
tcagtttttcggactgccttactgcaatactgaaagtaagaaggtttgacagattttatagttt |
42156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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