View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14171_low_10 (Length: 311)

Name: NF14171_low_10
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14171_low_10
NF14171_low_10
[»] chr5 (1 HSPs)
chr5 (63-266)||(33085002-33085202)
[»] chr4 (4 HSPs)
chr4 (143-210)||(36443364-36443431)
chr4 (143-204)||(48390971-48391031)
chr4 (143-210)||(42901300-42901367)
chr4 (218-252)||(42901440-42901474)
[»] chr2 (2 HSPs)
chr2 (154-201)||(41840272-41840319)
chr2 (143-204)||(37078247-37078307)
[»] chr1 (3 HSPs)
chr1 (143-210)||(24656595-24656661)
chr1 (169-204)||(45849363-45849398)
chr1 (144-202)||(27758972-27759029)
[»] chr3 (2 HSPs)
chr3 (144-204)||(6084430-6084489)
chr3 (178-210)||(24255901-24255933)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 63 - 266
Target Start/End: Complemental strand, 33085202 - 33085002
Alignment:
Q  63 ccaccaaacaaatgatgccacatcggcggtggtctaatggatggatggcaataatgcttgtcaatgaaaaaagagcaatgatgatacatagacatattta 162  Q
    |||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  33085202 ccaccaaacaaacgatgccacatcagtggtggtctaatggatggatggcaataatgcttgtcaatgaaaaaagagcaatgat---acatagacatattta 33085106  T
Q  163 gggggacatacactcttgtacctccacatagaaatgcaacatatgacacaatatatgtatgagaaaagggtgtttatgtatctttattcatgaaaaaata 262  Q
    ||||||||||||| |||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33085105 gggggacatacacccttgtacctccacataaaaatgcaacatgtggcacaatatgtgtatgagaaaagggtgtttatgtatctttattcatgaaaaaata 33085006  T
Q  263 tctt 266  Q
    ||||    
T  33085005 tctt 33085002  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 36443431 - 36443364
Alignment:
Q  143 atgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacatatgaca 210  Q
    |||| ||||||||||| ||||  |||||||||| |||||||||||||||||||||| ||||| |||||    
T  36443431 atgacacatagacatacttagatggacatacacccttgtacctccacatagaaatgtaacatgtgaca 36443364  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 48391031 - 48390971
Alignment:
Q  143 atgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacat 204  Q
    |||||||||||||||||||| | ||  |||||| ||||||||| ||||||||||||||||||    
T  48391031 atgatacatagacatatttatgtggg-atacacccttgtaccttcacatagaaatgcaacat 48390971  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 42901300 - 42901367
Alignment:
Q  143 atgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacatatgaca 210  Q
    |||||||||||| ||| ||| | |||||| || || |||||||||| ||||||||||||||| |||||    
T  42901300 atgatacatagatatacttaagtggacattcagtcatgtacctccatatagaaatgcaacatgtgaca 42901367  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 42901440 - 42901474
Alignment:
Q  218 tgtatgagaaaagggtgtttatgtatctttattca 252  Q
    ||||||||||||| |||||||||||||||||||||    
T  42901440 tgtatgagaaaagagtgtttatgtatctttattca 42901474  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 41840272 - 41840319
Alignment:
Q  154 acatatttagggggacatacactcttgtacctccacatagaaatgcaa 201  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  41840272 acatatttagggggacatacactcttgtacctccaagtagaaatgcaa 41840319  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 37078247 - 37078307
Alignment:
Q  143 atgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacat 204  Q
    |||||||||||||||| ||| | ||  |||||| ||||||||| ||||||||||||||||||    
T  37078247 atgatacatagacatacttatgtggg-atacacccttgtacctgcacatagaaatgcaacat 37078307  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 24656595 - 24656661
Alignment:
Q  143 atgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacatatgaca 210  Q
    |||||||||||||||| ||||| || ||||||| ||||||||||||||||||||| |||||| |||||    
T  24656595 atgatacatagacatacttaggtgg-catacacccttgtacctccacatagaaatacaacatgtgaca 24656661  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 45849363 - 45849398
Alignment:
Q  169 catacactcttgtacctccacatagaaatgcaacat 204  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45849363 catacacccttgtacctccacatagaaatgcaacat 45849398  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 27759029 - 27758972
Alignment:
Q  144 tgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaac 202  Q
    ||||||||||||||| ||||  ||  |||||| ||||||||||||||||||||||||||    
T  27759029 tgatacatagacataattagatggt-atacacccttgtacctccacatagaaatgcaac 27758972  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 6084430 - 6084489
Alignment:
Q  144 tgatacatagacatatttagggggacatacactcttgtacctccacatagaaatgcaacat 204  Q
    ||||||||||||||| ||| | ||  |||||||||||||||||||||||||||||||||||    
T  6084430 tgatacatagacatacttatgtggg-atacactcttgtacctccacatagaaatgcaacat 6084489  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 24255933 - 24255901
Alignment:
Q  178 ttgtacctccacatagaaatgcaacatatgaca 210  Q
    ||||||||||||||||||||||||||| |||||    
T  24255933 ttgtacctccacatagaaatgcaacatgtgaca 24255901  T

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