View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_12 (Length: 288)
Name: NF14171_low_12
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 43609842 - 43609577
Alignment:
| Q |
16 |
tttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaaccattgcaccagacatcagagcagaagtataataaagagcaacgccatg |
115 |
Q |
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| T |
43609842 |
tttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatg |
43609743 |
T |
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| Q |
116 |
cacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctacatcaaaataataaaacttggttgaaa |
215 |
Q |
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| T |
43609742 |
cacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaa |
43609643 |
T |
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| Q |
216 |
aataacagagattaaggaataataatgtactaccccaataatgaaagcataaaaatcttgatgatg |
281 |
Q |
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| T |
43609642 |
aataacagagattaaggaataataatgtactaccccaataatgaaagcataaaaatcttgaagatg |
43609577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 43603439 - 43603168
Alignment:
| Q |
10 |
ccaaactttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaaccattgcaccagacatcagagcagaagtataataaagagcaac |
109 |
Q |
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| T |
43603439 |
ccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaat |
43603340 |
T |
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| Q |
110 |
gccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctacatcaaaataataaaacttgg |
209 |
Q |
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| T |
43603339 |
accatgcacattcagagctaaagtaattctg-aaaagcaaccaagaaggattacagaaaaaattagtcctaagattctttgtcaaaatagca----tttg |
43603245 |
T |
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| Q |
210 |
ttgaaaaataac--agagattaaggaata---ataatgtactaccccaataatgaaagcataaaaatcttgatgatg |
281 |
Q |
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| T |
43603244 |
tttagaaatcacatagagattaaagaataatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatg |
43603168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 43616393 - 43616236
Alignment:
| Q |
10 |
ccaaactttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaaccattgcaccagacatcagagcagaagtataataaagagcaac |
109 |
Q |
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| T |
43616393 |
ccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaat |
43616294 |
T |
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| Q |
110 |
gccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacc |
168 |
Q |
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| T |
43616293 |
accattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggatcatagacc |
43616236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 43614923 - 43614888
Alignment:
| Q |
246 |
taccccaataatgaaagcataaaaatcttgatgatg |
281 |
Q |
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| T |
43614923 |
taccccaataatgaaagcataaaaatcttgaagatg |
43614888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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