View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_3 (Length: 484)
Name: NF14171_low_3
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_3 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 38128406 - 38128806
Alignment:
| Q |
1 |
aatctatacgctctactttggttctggttctgcagagctaatcttacttgtaatgaacctgttaataaaatcttcattttaggtagagtagcttaggcct |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128406 |
aatctatacgctctattttggttctggttctgcagagctaatcttacttgtaatgaacctgttaataaaatcttcattttaggtagagtagc-------- |
38128497 |
T |
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| Q |
101 |
tatctgatagcttggtagtatttaaccaactaccctttttcgtttcattttctcaaatataaagcagatacaaatgtctctgaatcctaaaggccatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128498 |
-----------ttggtagtatttaaccaactaccctttttcgtttcattttctcaaacataaagcagatacaaatgtctctgaatcctaaaggccatgca |
38128586 |
T |
|
| Q |
201 |
atcaaggcattccaggagcatgatagtcaaacagtacatgaactcctagaacagtacatcctcactctggtcccagcaggggtattatctctgannnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38128587 |
atcaaggcattccaggagcatgatagtcaaacagtacatgaactcctagaacagtacatccttactctggtcccagcaggggtattatctctgatttttt |
38128686 |
T |
|
| Q |
301 |
nnnnacctctatttactaagatgtattgctatctgctggcactaaatctgtagtctggttgtannnnnnnaaggaaaactacaatttactccatccaact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
38128687 |
ttttacctctatttactaagatgtattgctatctgctggcactaaatctgtagtctggttgtatttttttaaggaaaactgcaatttactccatccaact |
38128786 |
T |
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| Q |
401 |
tagcattaggaccatcttca |
420 |
Q |
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| T |
38128787 |
tagcattaggaccatcttca |
38128806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 45266763 - 45266469
Alignment:
| Q |
1 |
aatctatacgctctactttggttctggttctgcagagctaatcttacttgtaatgaacctgttaataaaatcttcattttaggtagagtagcttaggcct |
100 |
Q |
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|||||||| ||| || |||||||||||||||||| |||| |||| ||||||||| ||||||| | |||| | |||||||| ||||||||||||||| | |
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| T |
45266763 |
aatctatatgctttattttggttctggttctgcatagctgatctagcttgtaatgcacctgttcttgaaatttgcattttagctagagtagcttaggctt |
45266664 |
T |
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| Q |
101 |
tatctgatagcttggtagtatttaaccaact--accctttttcgtttcattttctcaaatataaagcagatacaaatgtctctgaat-----cctaaagg |
193 |
Q |
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||||||||||||||||| |||||||| || | | |||||||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||| |
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| T |
45266663 |
tatctgatagcttggtaatatttaacgaagtgcattttttttcgtttaattttctcaaaggtaaagcagaaacaaatgtctttgaatatgaacctaaaga |
45266564 |
T |
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| Q |
194 |
ccatgcaatcaaggcattccaggagcatgatagtcaaacagtacatgaactcctagaacagtacatcctcactctggtcccagcaggggtattat |
288 |
Q |
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| T |
45266563 |
ccatgcaaccaaggcattccaagagcatggtagtcaaacagtgcacgaactcctagacaagtacatcctcactctggtcccagcaggggtattat |
45266469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 21531227 - 21531162
Alignment:
| Q |
216 |
gagcatgatagtcaaacagtacatgaactcctagaacagtacatcctcactctggtcccagcaggg |
281 |
Q |
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| T |
21531227 |
gagcatggtagtcgaacaatgcatgaactccttgaccaatacatcctcactctgatcccagcaggg |
21531162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 2182 - 2117
Alignment:
| Q |
216 |
gagcatgatagtcaaacagtacatgaactcctagaacagtacatcctcactctggtcccagcaggg |
281 |
Q |
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| T |
2182 |
gagcatggtagtcgaacaatgcatgaactccttgaccaatacatcctcactctgatcccagcaggg |
2117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 26665893 - 26665963
Alignment:
| Q |
211 |
tccaggagcatgatagtcaaacagtacatgaactcctagaacagtacatcctcactctggtcccagcaggg |
281 |
Q |
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|||| ||||||| ||||| |||| | ||||||||||| || || |||||||||| |||| ||||||||||| |
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| T |
26665893 |
tccaagagcatggtagtcgaacaatgcatgaactccttgaccaatacatcctcattctgatcccagcaggg |
26665963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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