View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_4 (Length: 466)
Name: NF14171_low_4
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_4 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 66 - 451
Target Start/End: Complemental strand, 47321129 - 47320742
Alignment:
| Q |
66 |
ttggtatataacttgattaaaaatgagtttatggcttcaattatctgtgaatgagatttgaaggtaaattggttt--gtgtaggatttggtggcttgttt |
163 |
Q |
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| T |
47321129 |
ttggtatataacttgattaaaaatgagtttatggcttcaattatttgtgaatgagatttgaaggtaaagtggtttttgtgtaggacttggtggcttgttt |
47321030 |
T |
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| Q |
164 |
aggttgactaatttacgtaatagtgagctcaacaatgaatttgagtgtgaaaatcacgtaaaacctatcttcaagttagaatcattttttaatgcaaaat |
263 |
Q |
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| T |
47321029 |
aggttgactaatttacgtaatagtgagctcaacaatgaatttgagtgtgaaaatcacgtaaaacctatcttcaagttagaatcattttttaatgcaaaat |
47320930 |
T |
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| Q |
264 |
caattctacaatagaacatccaaacatagcgaactcaattctacatctccttaataaattttgcctcatccaaaagtggaacaaatcatacacttaatat |
363 |
Q |
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| T |
47320929 |
cagttctacaatagaacatccaaacatagctaactcaattctacatctccttaataaatttttcctcatccaaaagtggaacaaatcatacacttaatat |
47320830 |
T |
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| Q |
364 |
gtatataatatagatagatacattagatcttgtgattactactaaatgttatcagtttggtatatggattaaacagggaactttatat |
451 |
Q |
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| T |
47320829 |
gtatattatatagatagatacattagatcttgtgattactactaaatgttatcagtttggtatatggattaaacagggaactttatat |
47320742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 47321203 - 47321149
Alignment:
| Q |
17 |
gcagtagttagttaatgttgtgagattgtcttttaaccttgatttttacttggta |
71 |
Q |
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| T |
47321203 |
gcagtagttagttaatgttgtgagattgtcttttaaccttgatttttacttggta |
47321149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 41517003 - 41516963
Alignment:
| Q |
232 |
cttcaagttagaatcattttttaatgcaaaatcaattctac |
272 |
Q |
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| T |
41517003 |
cttcaagttagaatcaattttaaacgcaaaatcaattctac |
41516963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 12376 - 12434
Alignment:
| Q |
232 |
cttcaagttagaatcattttttaatgcaaaatcaattctacaatagaacatccaaacat |
290 |
Q |
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| T |
12376 |
cttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacat |
12434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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