View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_5 (Length: 428)
Name: NF14171_low_5
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 7216602 - 7216941
Alignment:
| Q |
17 |
ggattgaaggggggcccttttgggggtttgctgcagggagaaaatttagagagagattctttgcagaagagaaatatgcatataatggcagagagggcca |
116 |
Q |
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| T |
7216602 |
ggattgaaggggggcccttttgggggtttgctgcagggagaaaatttagagagagattctttgcagaagagaaatatgcatataatggcagagagggcca |
7216701 |
T |
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| Q |
117 |
tgagacgcaagagacatagaaaaagacacaacatgtataggacaagatgcttaaacattcagagacatttctccatcattactatcctatttccagctct |
216 |
Q |
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| T |
7216702 |
tgagacgcaagagacatagaaaaagacacaacatgtataggacaagatgcttaaacattcagagacatttctccatcattactatcctatttccagctct |
7216801 |
T |
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| Q |
217 |
gttcatttctacagtctatgtgtgtcatgcaatcaccaaatccatattagatacaatagctctgaacaatttcaagtatataaacgtgtatacattaata |
316 |
Q |
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| T |
7216802 |
gttcatttctacagtctatgtgtgtcatgcaatcaccaaatccatattagatacaatagctctgaacaatttcaagtatataaacgtgtatacattaata |
7216901 |
T |
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| Q |
317 |
ttaattcacatcatacatgcacatttacattatatagtag |
356 |
Q |
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| T |
7216902 |
ttaattcacatcatacatgcacatttacattatatagtag |
7216941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 7217831 - 7217903
Alignment:
| Q |
347 |
tatatagtagtggttaggtacagttattaaatcatcaatatttttctagaagtct---tttaagttgacatat |
416 |
Q |
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| T |
7217831 |
tatatagtagtggttaggtacagttattaaatcatcaatatttttctagaagtctatgtttaagttgacatat |
7217903 |
T |
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