View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14171_low_8 (Length: 333)
Name: NF14171_low_8
Description: NF14171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14171_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 21076764 - 21077014
Alignment:
| Q |
65 |
ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagcatttaaaggtggtctttgtaagattgtcaaaacgttcacaatta |
164 |
Q |
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| T |
21076764 |
ccctttgtgttttgaacatagcatgatgtgtttacaaccatatagcgaaatatagcgtttaaaggtggtctttgtaagattgtgaaatcgttcacaatta |
21076863 |
T |
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| Q |
165 |
agctgattatagctaaagtctgaagaagctttccaaaacatgtatggtcaggtagacnnnnnnntaagagaaattgtgcggaatctgagaggatatctca |
264 |
Q |
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| T |
21076864 |
agctgaatatagctaaagtttgaagaagctttccaaaacatgtatggccaggtagacaaaaaaataagagaaattgtgcggaatttgagagggtatttca |
21076963 |
T |
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| Q |
265 |
gacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtt |
315 |
Q |
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| T |
21076964 |
gacaccatattgaaaaatctcacagttaatggaaactgtactagcccagtt |
21077014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 21022832 - 21023091
Alignment:
| Q |
65 |
ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagcatttaaaggtggtctttgtaagattgtcaaaacgttcacaatta |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
21022832 |
ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagggtttaaaggttgtctttgtaagattgtcaaatcgttaacaatta |
21022931 |
T |
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| Q |
165 |
agctgattatagctaaagtctg-aagaagctttccaaaacatgtatggtcaggtagac-----nnnnnnntaagagaaattgtgcggaatctgagaggat |
258 |
Q |
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| T |
21022932 |
agttgattatagctaaattctgaaagaagctttccaaaacatgtatggccagatagacaaaaaaaaaaaaaaagagaaattgtgcagaatttgagagagt |
21023031 |
T |
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| Q |
259 |
atctcagacaccatattgaaaaatctcacagt---tagtggaaactgtactagcccagtt |
315 |
Q |
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| T |
21023032 |
atctcaggcaccttattggaaaatctcacagtgagtaggggggactgtactagcccagtt |
21023091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 21076619 - 21076676
Alignment:
| Q |
10 |
catcatcatgggaataatgtatcctaacaataacttagattattgtaagctctgtccc |
67 |
Q |
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| T |
21076619 |
catcatcatgggaataatgtatcctaacaataacttagattattgtaagctctgtccc |
21076676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 21022699 - 21022744
Alignment:
| Q |
22 |
aataatgtatcctaacaataacttagattattgtaagctctgtccc |
67 |
Q |
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| T |
21022699 |
aataatgtatcctagcaataacttagattactgtaagctctgtccc |
21022744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 21806760 - 21806803
Alignment:
| Q |
245 |
gaatctgagaggatatctcagacaccatattgaaaaatctcaca |
288 |
Q |
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| T |
21806760 |
gaatctaagaggatatctcagacaccatattaaaaaatatcaca |
21806803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 33699824 - 33699738
Alignment:
| Q |
229 |
taagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtt |
315 |
Q |
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| T |
33699824 |
taagagaaagtgtgcagaatctgagagggtatctcagacaccatattggaaaatctcacagttagtggagaccatactagcctagtt |
33699738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 260701 - 260759
Alignment:
| Q |
230 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
288 |
Q |
| |
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|||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
260701 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
260759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 655220 - 655162
Alignment:
| Q |
230 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
288 |
Q |
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| T |
655220 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
655162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 840955 - 840897
Alignment:
| Q |
230 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
288 |
Q |
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|||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
840955 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
840897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 25427550 - 25427487
Alignment:
| Q |
258 |
tatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtttgatga |
321 |
Q |
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| T |
25427550 |
tatctcaagcaccagattgaaaaatctcaaagtcagtggagactggactagcccagttggatga |
25427487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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