View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14172_high_2 (Length: 513)
Name: NF14172_high_2
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 9963412 - 9962986
Alignment:
| Q |
2 |
accaaaagaaataggtataaactctaatgcttcatgttgtaactaattatttggttacaacgaaatacatgtgtaagaaaataattttatcaattttttg |
101 |
Q |
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| T |
9963412 |
accaaaagaaataggtataaactcgaatgcttcatgctgtaactaattatttggttacaacgaaatacatgtgtaagaaaataattttatcaattttttg |
9963313 |
T |
|
| Q |
102 |
attaagaggattgggaaaatctaagatgtctaaaataaaataagatttttgagagtgacatctcttcttttacaaattgattttgtaaggataagttgga |
201 |
Q |
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| T |
9963312 |
attaagaggattgggaaaacttaagatgtttaaaataaaataaaattatgaagagtaacatttcttcttttacaaatcgattttgtaaagataagttgga |
9963213 |
T |
|
| Q |
202 |
tttaatatataaaaaatttaatactatatcaaaatcttttgataagagactcaagatcatctactat----ttatattcacatataaattctaatagtat |
297 |
Q |
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| T |
9963212 |
tttaatatataaaaaatttaatactatatcaaaatcttttgataagagactcaagatcatctactatttatttatattcacatataaaatccaatagtat |
9963113 |
T |
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| Q |
298 |
ttgaagtgagacgagtattgagaaacacttatctaccacataaaatataattaaaaactaaaatgagtttacaaaaaagtgacacaactcaacaagttgg |
397 |
Q |
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| T |
9963112 |
ttgaagtgagacgtgtattgagaaacacttatctaccacataaaatagaattaaaaactaaaatgagttgacaaaaaagtgatacaactcaacaagttgg |
9963013 |
T |
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| Q |
398 |
tcttataaggatgagtaatataaaata |
424 |
Q |
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| T |
9963012 |
tcttacaaggatgagtaatataaaata |
9962986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 502
Target Start/End: Complemental strand, 9962619 - 9962534
Alignment:
| Q |
416 |
tataaaatacctaataaggaatgagttcctataatgatgcaactttaagtttgttgttagctctttctataggaactgctatttcat |
502 |
Q |
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| T |
9962619 |
tataaaatacctaataaggaatgagttcctataatgatgcaa-tttaactttgttgttagctctttatatgggaactgctatttcat |
9962534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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