View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14172_high_4 (Length: 408)
Name: NF14172_high_4
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 49871718 - 49872112
Alignment:
| Q |
1 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
100 |
Q |
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| T |
49871718 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
49871817 |
T |
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| Q |
101 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
200 |
Q |
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| T |
49871818 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
49871917 |
T |
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| Q |
201 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
300 |
Q |
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| T |
49871918 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
49872017 |
T |
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| Q |
301 |
aattccttgtagagtgttgagttgtggatttgtttcgagagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtctgtgtt |
395 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49872018 |
aattccttgtagagtgttgagttgtgtatttgtttcacgagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtctttgtt |
49872112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 49865787 - 49866178
Alignment:
| Q |
1 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
49865787 |
acaaatcctgaaagtccattgattatatccaaagcattgttagttagctccaaagaagccttaagaaccttagccatggtttgttctgcatgggtagttg |
49865886 |
T |
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| Q |
101 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
49865887 |
tgttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaa |
49865986 |
T |
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| Q |
201 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49865987 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagct |
49866086 |
T |
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| Q |
301 |
aattccttgtagagtgttgagttgtggatttgtttcgagagttcttcagctgttgcattgaatgcttgtttgatcaattccttcatgtctgt |
392 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
49866087 |
aattccttgtagagttttgagttatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaattccttcatgtctgt |
49866178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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