View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14172_low_1 (Length: 584)

Name: NF14172_low_1
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14172_low_1
NF14172_low_1
[»] chr6 (8 HSPs)
chr6 (113-567)||(13101001-13101454)
chr6 (253-567)||(20548921-20549234)
chr6 (390-502)||(13141152-13141263)
chr6 (182-242)||(13146978-13147038)
chr6 (12-65)||(13101502-13101555)
chr6 (256-336)||(13141080-13141153)
chr6 (17-61)||(13146868-13146912)
chr6 (194-258)||(13148004-13148068)
[»] scaffold0499 (3 HSPs)
scaffold0499 (255-508)||(3859-4111)
scaffold0499 (110-215)||(3705-3810)
scaffold0499 (12-65)||(3607-3660)


Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 113 - 567
Target Start/End: Complemental strand, 13101454 - 13101001
Alignment:
Q  113 aataactactggtatgaattaaaagaattcttgaattacaactgatgaactacataattcttgaattcttgaattacagaattcttgaatctcaactgat 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13101454 aataactattggtatgaattaaaagaattcttgaattacaactgatgaactacataattcttgaattcttgaattacagaattcttgaatctcaactgat 13101355  T
Q  213 gaactttgactttgaagtttttcgatcaaataattcaattagtttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13101354 gaactttgactttgaagtttttcgatcaaataattcaattagtttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagta 13101255  T
Q  313 gtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttcttactat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13101254 gtccagaatgtggattttgatgtgttgacaaaggatgaagtgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttcttactat 13101155  T
Q  413 tgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttatcttctcatcataagctgctcttc 512  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  13101154 tgtttgtcctatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaac-ctttctgtggttttgcttttatcttctcatcataagctgctcttc 13101056  T
Q  513 tatccttatcggagagtatactccatgcctctgaaataagcttaaaggccccatc 567  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  13101055 tatccttatcagacagtatactccatgcctatgaaataagcttaaaggccccatc 13101001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 253 - 567
Target Start/End: Original strand, 20548921 - 20549234
Alignment:
Q  253 agtttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagtagtccagaatgtggattttgatgtgttgacaaaggatgaag 352  Q
    |||||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||  ||| || |||||||||    
T  20548921 agtttaaggttaagatacttcacaagatactcatactgcatatgacatcgatggcaagtagtccaaaatgtggattttgatgcattggcagaggatgaag 20549020  T
Q  353 tgggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttcttactattgtttgccccatttgtcgtcgcttttgtcgatgaaccacc 452  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| |||||||| ||||| ||||| ||||| |||| ||||||||||||||||||||||||    
T  20549021 tgggttctttagccatattcttatgactctttccgcttgaaggcgttttctttttactgttgttagccccgtttgccgtcgcttttgtcgatgaaccacc 20549120  T
Q  453 aaaaatggttgaacattttatgtggttttgcttttatcttctcatcataagctgctcttctatccttatcggagagtatactccatgcctctgaaataag 552  Q
    ||||||||||||||  ||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20549121 aaaaatggttgaac-ctttctgtggttttgcttttatcttcgcatcataggctgctcttttatccttatcggacagtatactccatgcctctgaaataag 20549219  T
Q  553 cttaaaggccccatc 567  Q
    |  ||| ||||||||    
T  20549220 cccaaacgccccatc 20549234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 390 - 502
Target Start/End: Original strand, 13141152 - 13141263
Alignment:
Q  390 tgaaggtgttttcttcttactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaaaaatggttgaacattttatgtggttttgcttttat 489  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  13141152 tgaaggcgtttttttcttactattgtttgccccatttgccgtcgcttttgtcgatgaaccaccaaaaattgttgaac-ctttatgtggttttgcttttat 13141250  T
Q  490 cttctcatcataa 502  Q
    |||||||||||||    
T  13141251 cttctcatcataa 13141263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 13146978 - 13147038
Alignment:
Q  182 tgaattacagaattcttgaatctcaactgatgaactttgactttgaagtttttcgatcaaa 242  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13146978 tgaattacagtattcttgaatctcaactgatgaactttgaatttgaagtttttcgatcaaa 13147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 13101555 - 13101502
Alignment:
Q  12 attccttagagtaagtatagatatgaagaattttgtcaactgcaattgcaggtg 65  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  13101555 attccttagagaaattatagatatgaagaattttgtcaactgcaattacaggtg 13101502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 13141080 - 13141153
Alignment:
Q  256 ttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagtagtccagaatgtggattttgatgtg 336  Q
    ||||||||||||||||||||||||||||| || |||||       ||||||||||||||||| |||||| |||||||||||    
T  13141080 ttaaggttaagatactttacgagatactcctactgcat-------cgatggcaagtagtccaaaatgtgaattttgatgtg 13141153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 13146868 - 13146912
Alignment:
Q  17 ttagagtaagtatagatatgaagaattttgtcaactgcaattgca 61  Q
    |||||| ||||| |||||||||||||||| |||| ||||||||||    
T  13146868 ttagagaaagtagagatatgaagaattttttcaagtgcaattgca 13146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 13148068 - 13148004
Alignment:
Q  194 ttcttgaatctcaactgatgaactttgactttgaagtttttcgatcaaataattcaattagttta 258  Q
    ||||||||| |||||||||||||| ||| |||||| |||||| ||||| |  |||||||| ||||    
T  13148068 ttcttgaatttcaactgatgaactctgagtttgaaatttttccatcaagttcttcaattaattta 13148004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 255 - 508
Target Start/End: Original strand, 3859 - 4111
Alignment:
Q  255 tttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagtagtccagaatgtggattttgatgtgttgacaaaggatgaagtg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  3859 tttaaggttaagatactttacgagatactcttaatgcatatgacatcgatggcaagtagtccagaatgatgattttgatgtgttgacaaaggatgaagtg 3958  T
Q  355 ggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttcttactattgtttgccccatttgtcgtcgcttttgtcgatgaaccaccaa 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3959 ggttctttagccgtattcttatgagtctttccacttgaaggtgttttcttcttactattgtttgtcccatttgccgtcgcttttgtcgatgaaccaccaa 4058  T
Q  455 aaatggttgaacattttatgtggttttgcttttatcttctcatcataagctgct 508  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||    
T  4059 aaatggttgaac-ctttctgtggttttgcttttatcttctcatcataagttgct 4111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 3705 - 3810
Alignment:
Q  110 tggaataactactggtatgaattaaaagaattcttgaattacaactgatgaactacataattcttgaattcttgaattacagaattcttgaatctcaact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3705 tggaataactactggtatgaattaaaagaattcttgaattacaactgatgaactacataattcttgaattcttgaattacagaattcttgaatctcaact 3804  T
Q  210 gatgaa 215  Q
    ||||||    
T  3805 gatgaa 3810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 3607 - 3660
Alignment:
Q  12 attccttagagtaagtatagatatgaagaattttgtcaactgcaattgcaggtg 65  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3607 attccttagagaaagtatagatatgaagaattttgtcaactgcaattgcaggtg 3660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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