View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14172_low_10 (Length: 315)
Name: NF14172_low_10
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 31190319 - 31190607
Alignment:
| Q |
18 |
atttggtgtgcaataacctccttctaatgcttaatcataatacacnnnnnnnnnnnnngacaaataatcataatactctgaaatagttgtactaagaatc |
117 |
Q |
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| T |
31190319 |
atttggtgtgcaataacctccttctaatgcttaatcataatacactttttttttttttgacaaataatcataatactctgaaatagttgtactaagaatc |
31190418 |
T |
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| Q |
118 |
ttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaattgaagatacgtgatttaagattga |
217 |
Q |
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| T |
31190419 |
ttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaattgaagatacgtgatttaagattga |
31190518 |
T |
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| Q |
218 |
ttatctagtattctttatttatttttgttttaaaatgtctatcagaaactcacacacattaagtgtaaagtgcatagtcgtagtattat |
306 |
Q |
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| T |
31190519 |
ttatctagtattctttatttatttttgttttaaaatgtctatcagaaactcacacacattaagtgtaaagtgcatagtcgtagtattat |
31190607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 31202186 - 31202327
Alignment:
| Q |
102 |
agttgtactaagaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaa-ttgaagat |
200 |
Q |
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| T |
31202186 |
agttgtacaaagaatcttggttagaat--tcacaaacattaatatcatcaaagacatgctaaaatatgaataatcattttaggttaaaaaatttgaagac |
31202283 |
T |
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| Q |
201 |
acgtgatttaagattgattatctagtattctttatttatttttg |
244 |
Q |
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| T |
31202284 |
gcatgatttaagattgattatctagtattttttatttatttttg |
31202327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 31172667 - 31172803
Alignment:
| Q |
112 |
agaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaa-attgaagatacgtgattta |
210 |
Q |
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| T |
31172667 |
agaatctcggttagaat--tcacaaacattaatgttctcaaagacatgctaaaatataaat---cattttaggttaaaaatatggaagacacgtgattta |
31172761 |
T |
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| Q |
211 |
agattgattatctagtattctttatttatttttgttttaaaa |
252 |
Q |
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| T |
31172762 |
agattgattatctagtattatttatttatttttgtttaaaaa |
31172803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 31151236 - 31151384
Alignment:
| Q |
139 |
attaatgtcatcgaagacatgttaaaatgtaaataatcatttt----aggttaaaaaattgaagatacgtgatttaagattgattatctagta------t |
228 |
Q |
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| T |
31151236 |
attaatgtcaccaaagacatgctaaaatataaataatcattttctttatgttaaaaaattgaagactcgtgatttaagattgattatctagtattttttt |
31151335 |
T |
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| Q |
229 |
tctttatttatttttgttttaaaatgtctatca--gaaactcacacaca |
275 |
Q |
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| T |
31151336 |
tatttttttatttttgtttcaaaatgtctataagtgaaactcacacaca |
31151384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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