View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14172_low_11 (Length: 282)
Name: NF14172_low_11
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8459585 - 8459467
Alignment:
| Q |
1 |
aaaagctgcaagacaagttagtattggaccagaaaaagctaatatcttgttaaacatcaaaacttttgtactcaacttcaaataatcttccatatcttta |
100 |
Q |
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| T |
8459585 |
aaaagctgcaagacaagttagtattggaccagaaaaagctaatatcttgttaaacatcaaaacttttgtactcaacttcaaataatcttccatatcttta |
8459486 |
T |
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| Q |
101 |
tttttcaaaacgttaacga |
119 |
Q |
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| T |
8459485 |
tttttcaaaacgttaacga |
8459467 |
T |
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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 8459394 - 8459304
Alignment:
| Q |
192 |
gcttcttcatttgtggccaccatgttgctggtttcacaatttgagggaatttctcaatcatcgagcctaacaaaggaagagggtaagcttt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459394 |
gcttcttcatttgtggccaccatgttgctggtttcacaatttgagggaatttctcaatcatcgagcctaacaaaggaagagggtaagcttt |
8459304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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