View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14172_low_3 (Length: 475)
Name: NF14172_low_3
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_low_3 |
 | |
|
| [»] scaffold0562 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 25918378 - 25917939
Alignment:
| Q |
16 |
aatatcgtgcttcaaaaataaccaatcataaatattgtatgatctttattatgacatttttgttttattaatttgctgtattgttgtgaatatgaaatga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25918378 |
aatatcgtgcttcaaaaataaccaatcataaatattgtatggtctttattatgacatttttgttttattaatttgtagtattgttgtgaatatgaaatga |
25918279 |
T |
|
| Q |
116 |
catgatgatgattttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25918278 |
catgatgatgattttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataata |
25918179 |
T |
|
| Q |
216 |
tcaatgggtggtataaacaaagaagttaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25918178 |
tcaatgggtggtataaacaaagaagtgaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttcc |
25918079 |
T |
|
| Q |
316 |
ttaaagtctttgataccactgcatttcctactagatccaaactttaatgttttaattacataatagcaccaagattgtgctctaatcatcacaatttgtt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25918078 |
ttaaagtctttgataccactgcatttcctactagatccaaactttaatgctttaattacataatagcaccaagattgtgctctaatcatcacaatttgtt |
25917979 |
T |
|
| Q |
416 |
tatgaagtgtgtaatgtaataaaaatattcagaattaatatt |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25917978 |
tatgaagtgtgtaatgtaat--aaatattcagaattaatatt |
25917939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 328
Target Start/End: Original strand, 8713 - 8915
Alignment:
| Q |
126 |
attttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataatatcaatgggtg |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||| || || |||||||| |||||| ||||||||||||||||||| |||| |||| || | |||||||||| |
|
|
| T |
8713 |
attttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtg |
8812 |
T |
|
| Q |
226 |
gtataaacaaagaagttaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttccttaaagtctt |
325 |
Q |
| |
|
| || || |||||| ||||||||||| || ||||||||| || || ||| | ||||| || ||||| ||||||||| | ||||| || |||||||| |
|
|
| T |
8813 |
gcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctt |
8912 |
T |
|
| Q |
326 |
tga |
328 |
Q |
| |
|
||| |
|
|
| T |
8913 |
tga |
8915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 328
Target Start/End: Original strand, 3877877 - 3878079
Alignment:
| Q |
126 |
attttgcagtttgtgatggtcctattgaaatcatctgtgccaatatcatttgaaggtaacaaagaaccagctgcttatgctgaaataatatcaatgggtg |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||| || || |||||||| |||||| ||||||||||||||||||| |||| |||| || | |||||||||| |
|
|
| T |
3877877 |
attttgcagtttgtgatggttatattgaaggggtcagttccaatatcgtttgaaagtaacaaagaaccagctgcatatggtgaactagtttcaatgggtg |
3877976 |
T |
|
| Q |
226 |
gtataaacaaagaagttaagaagaatcttattgctaccattggtactatattgcagtccaagctttctatcccaagaacacgttttttccttaaagtctt |
325 |
Q |
| |
|
| || || |||||| ||||||||||| || ||||||||| || || ||| | ||||| || ||||| ||||||||| | ||||| || |||||||| |
|
|
| T |
3877977 |
gcattaattcagaagtgaagaagaatctaatcagtaccattggcacaatcttggaatccaacctatctataccaagaacaagattttttctcaaagtctt |
3878076 |
T |
|
| Q |
326 |
tga |
328 |
Q |
| |
|
||| |
|
|
| T |
3878077 |
tga |
3878079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University