View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14172_low_6 (Length: 390)
Name: NF14172_low_6
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 44908687 - 44908563
Alignment:
| Q |
64 |
attcatatatttagtttttctttgcttcaaactcaggtgaagataaaataaataaccatggtatgtcatggattgtatttgtatattgaaaaaataacgt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44908687 |
attcatatatttagtttttctttgcttcaaactcaggtgaagataaaataaataaccatggtatgtcatggattgtatttgtatattgaaaaaataacgt |
44908588 |
T |
|
| Q |
164 |
aatgaagggtctactctgaaaatct |
188 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44908587 |
aatgaagggtctactctgaaaatct |
44908563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 44908501 - 44908443
Alignment:
| Q |
246 |
gtgattcttctagcttaaacttctagttccaaaattattgaaggaactatacatatact |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44908501 |
gtgattcttctagcttaaacttctagttccaaaattattgaaggaactatacatatact |
44908443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 19880849 - 19880811
Alignment:
| Q |
18 |
aatcagtaagttaaaagttaatcaaatagctttgatctc |
56 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
19880849 |
aatcagtgagttaaaagctaatcaaatagctttgatctc |
19880811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 13037493 - 13037456
Alignment:
| Q |
26 |
agttaaaagttaatcaaatagctttgatctctgaaaaa |
63 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13037493 |
agttaaaagctaatcaaatagccttgatctctgaaaaa |
13037456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University