View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14172_low_8 (Length: 352)
Name: NF14172_low_8
Description: NF14172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14172_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 36691358 - 36691024
Alignment:
| Q |
18 |
aaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaag |
117 |
Q |
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| T |
36691358 |
aaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaag |
36691259 |
T |
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| Q |
118 |
taatactaatgttccgtttgcgacctacacatattccaatcctatgaatctgttggaggaccattttgggttctatgatgcagtgaatgaatctctaaac |
217 |
Q |
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| T |
36691258 |
taatactaatgttccgtttgcgacctacacatatcctaatcctatgaatctgttggaggaccattttgggttctatgatgcagtgaatgaatctctaaac |
36691159 |
T |
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| Q |
218 |
aagatagaatttgaagatgaggtctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtaca |
317 |
Q |
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| T |
36691158 |
aagatagaatttgaagatgaggtctctgctcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtaca |
36691059 |
T |
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| Q |
318 |
gcaagatgggcaacatatgggagagagatgatatt |
352 |
Q |
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| T |
36691058 |
gcaagatgggcaacatatgggagagagatgatatt |
36691024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 23655043 - 23654714
Alignment:
| Q |
17 |
aaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaa |
116 |
Q |
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| T |
23655043 |
aaaaacataggacttgagaagaaggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttggggaaatacatgaatctttta |
23654944 |
T |
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| Q |
117 |
gtaatactaatgttccgtttgcgacctacacatattccaatcctatgaatctgttgg---aggaccattttgggttctatgatgcagtgaatgaatctct |
213 |
Q |
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| T |
23654943 |
acaatgttacagttccttttgtgactta------tccgaatcatgtgaatatgttgggagaagacccttctggattctgtgatgcagtggatgaatatct |
23654850 |
T |
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| Q |
214 |
aaacaagatagaatttgaagatgagg---tctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgag |
310 |
Q |
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| T |
23654849 |
aaacaagatagaatttaaagatgaggaggtatctactcttcttagagttgcacgtgaatgtgttcatcctttgtttgaacaaaggcctactatgcttgag |
23654750 |
T |
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| Q |
311 |
gtgtacagcaagatgggcaacatatgggagagagat |
346 |
Q |
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| T |
23654749 |
gtgtataacaagatatgcaacataggggaaagagat |
23654714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 23803527 - 23803856
Alignment:
| Q |
17 |
aaaaacataggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaa |
116 |
Q |
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| T |
23803527 |
aaaaacataggacttgagaagaaggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttggggaaatacatgaatctttta |
23803626 |
T |
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| Q |
117 |
gtaatactaatgttccgtttgcgacctacacatattccaatcctatgaatctgttgg---aggaccattttgggttctatgatgcagtgaatgaatctct |
213 |
Q |
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| T |
23803627 |
acaatgttacagttccttttgtgactta------tccgaatcatgtgaatatgttgggagaagacccttctggattctgtgatgcagtggatgaatatct |
23803720 |
T |
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| Q |
214 |
aaacaagatagaatttgaagatgagg---tctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgag |
310 |
Q |
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| T |
23803721 |
aaacaagatagaatttaaagatgaggaggtatctactcttcttagagttgcacgtgaatgtgttcatcctttgtttgaacaaaggcctactatgcttgag |
23803820 |
T |
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| Q |
311 |
gtgtacagcaagatgggcaacatatgggagagagat |
346 |
Q |
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| T |
23803821 |
gtgtataacaagatatgcaacataggggaaagagat |
23803856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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