View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_high_3 (Length: 462)
Name: NF14173_high_3
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 33695255 - 33695665
Alignment:
| Q |
18 |
ataataaaacctctcaatttcgtcattttacgtggattgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattg |
117 |
Q |
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| T |
33695255 |
ataataaaacctctcaatttcatcattttacgtggattgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattg |
33695354 |
T |
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| Q |
118 |
cttcttgttaaagatgtagtacttcgtcagaaatttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttac |
217 |
Q |
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| T |
33695355 |
ctacttgttaaagatgtagtacttcgtcagaaatttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttac |
33695454 |
T |
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| Q |
218 |
ataatgatcctaatgaaggtaaacgtcatttatgattcacaattaatgcatgcaatcggacaacatagtgctatttttctcattggatattggtttattt |
317 |
Q |
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| T |
33695455 |
ataatgatcctaatgaaggtgaacgtcatttatgattcacaattaatgcatgcaatcggacaacatagtgctatttttctcattggatattgatttattt |
33695554 |
T |
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| Q |
318 |
aaaagtctagaaacgacgaatcnnnnnnng--actggtcagtcaccctctctaatttattcttagtcaaaaagcaatacaagaatgaaattaatttaata |
415 |
Q |
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| T |
33695555 |
aaaagtctagaaacgacgaatctttttttgacactagtcagtcaccctctctaatttattcttagtcaaaaatcaatacaagaatgaaattaatttaata |
33695654 |
T |
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| Q |
416 |
attttatttaa |
426 |
Q |
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| T |
33695655 |
attttatttaa |
33695665 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 35297316 - 35297401
Alignment:
| Q |
152 |
ttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttacataatgatcctaatgaaggt |
237 |
Q |
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| T |
35297316 |
ttttacatatgttgcgtgattgccctaaggccatgcgggtttggcataaactcatatttaattttcataatgattcaaatgaaggt |
35297401 |
T |
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