View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_high_6 (Length: 438)
Name: NF14173_high_6
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 29703038 - 29703443
Alignment:
| Q |
15 |
caaagggaaggtggtgatattggtacaccagctgttcaaccacgaacagctcgtagaactacgactcaaaggaaaccggtgaaagaagctgaaagcacta |
114 |
Q |
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| T |
29703038 |
caaagggaaggtggtgatattggtacaccggctgttcaaccacgaacagctcgcagaactacgactcaaaggaaaccggtgaaagaagctgaaagcacta |
29703137 |
T |
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| Q |
115 |
aggtttctacaagggttaaccgtgggggaagaggtggagttgctgaaggggaagttgagcaagagaacttagatgctaatgttgatgccggtactcctgc |
214 |
Q |
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| T |
29703138 |
aggtttctacaagggttaaccgtgggggaagaggtggagttgctgaaggggaagttgagcaagagaacttagatgctaatgttgatgccggtactcctgc |
29703237 |
T |
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| Q |
215 |
tgttgtgccaactagcaggagaagggttcctgctgtttctactcggagaaagaaggaagtgattgtgatagaagatgaagatgatgttgtgagtgaggtg |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29703238 |
tgttgtgccaactagcaggagaagggttccagctgtttctactcggagaaagaaggaagtgattgtgatagaagatgaagatgatgttgtgagtgaggtg |
29703337 |
T |
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| Q |
315 |
caaggaaaggcaacggatgtggccaaaactcctgctgcagctcccagcagtagaaccagagctggtcgttctgctcggaacaaaactgagatctctgatg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29703338 |
caaggaaaggcaacggatgtggccaaaactcctgctgcagctcccagcagtaggaccagagctggtcgttctgttcggaacaaaactgagatctctgatg |
29703437 |
T |
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| Q |
415 |
gaactt |
420 |
Q |
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| T |
29703438 |
gaactt |
29703443 |
T |
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