View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_high_7 (Length: 406)
Name: NF14173_high_7
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 10419580 - 10419210
Alignment:
| Q |
13 |
atgaagagattgctgaaagtattatcttggatctatctcagtgcactgctttgttttgggggg--ttggtttgtatatgtttctttatcatttgataata |
110 |
Q |
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| T |
10419580 |
atgaagagattgctgaaagtattatcttggatctatctcagtgcactgctttattttggggggggttgggttgtatatgtttctttatcatt-------- |
10419489 |
T |
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| Q |
111 |
ttatcattgaaagaatgtacaataagatatattgtatcataaggagttgtggtaaatgaaaacattttcctttaatatcatcatatataccttttgccat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10419488 |
--atcattgaaagaatgtacaataagatatattgtatcataatgagttgtggtaaatgaaaacattttcctttaatatcatcatatataccttttgccat |
10419391 |
T |
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| Q |
211 |
aaatctccctttatttatatacatttgcattacacatgagttaaagcaggagcatggttcttgttgtcttattagacacatgatgcattacgatgactat |
310 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10419390 |
aaatctccctttatttatatacttttgcattacacatgagttaaagcaggagcatggttcttgttgtcttattagacacatgatgcattacgatgactat |
10419291 |
T |
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| Q |
311 |
atgaagtcgtaaataaaaactttgcatttctgttgatgcaaaatagccnnnnnnnacccccttattttcttgtggacttta |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10419290 |
atgaagtcgtaaataaaaactttgcatttctgttgatgcaaaatagcctttttttacccccttattttcttgtggacttta |
10419210 |
T |
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