View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_low_10 (Length: 277)
Name: NF14173_low_10
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 53993158 - 53993420
Alignment:
| Q |
1 |
taggcacatcataaacctgtacattgtgtaaggtaaactagaaagcagagtggtactaacagtgaaagaatgagtcaaatgcacggaaaactcaacagca |
100 |
Q |
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| T |
53993158 |
taggtacatcatacacctgtacattgtgtaaggtaaactagaaagcagagtggtactaacagtgaaagaatgagtcaaatgcacggaaaactcaacagca |
53993257 |
T |
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| Q |
101 |
atgcccactgacataacgaggttgacaactgagatggcattcaattggatattcagaatggccatcataccctacaaagcataatattgtaagtaaacaa |
200 |
Q |
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| T |
53993258 |
atacccactgacataacgaggttgacaactgagatggcattcaattggatattcagaatggccatcataccctacaaagcataatattgtaagtaaacaa |
53993357 |
T |
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| Q |
201 |
attaacatggtgatttgaaattctaaatatcaagcaccaataaaaatatgaaacagtaaaaag |
263 |
Q |
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| T |
53993358 |
attaacatggtgatttgaaattctaaatatcaagcaccaataaaaacatgaaacagtaaaaag |
53993420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 35984577 - 35984507
Alignment:
| Q |
182 |
taatattgtaagtaaacaaattaacatggtgatttgaaattctaaatatcaagcaccaataaaaatatgaa |
252 |
Q |
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|||||||||| | ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
35984577 |
taatattgtatgaaaagaaattaacatggtgattagaatttctaaatatcaagcaccaataaaaatatgaa |
35984507 |
T |
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